STRINGSTRING
Dfer_0390 Dfer_0390 Dfer_0391 Dfer_0391 Dfer_1133 Dfer_1133 Dfer_1134 Dfer_1134 Dfer_2377 Dfer_2377 Dfer_5176 Dfer_5176 Dfer_5177 Dfer_5177 Dfer_5570 Dfer_5570 Dfer_5571 Dfer_5571
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0390PFAM: CheB methylesterase; KEGG: fjo:Fjoh_3351 CheB methylesterase. (193 aa)
Dfer_0391MCP methyltransferase, CheR-type; KEGG: fjo:Fjoh_3352 protein-glutamate O- methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type. (269 aa)
Dfer_1133KEGG: ajs:Ajs_0649 CheB methylesterase. (194 aa)
Dfer_1134PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; KEGG: chu:CHU_2079 MCP methyltransferase, CheR-type. (271 aa)
Dfer_2377PFAM: OmpA/MotB domain protein; KEGG: gfo:GFO_2317 OmpA/MotB family outer membrane protein. (295 aa)
Dfer_5176MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; KEGG: reu:Reut_B4915 PAS; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; PAS fold-3 domain protein; CheB methylesterase; PAS fold domain protein; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type; PAC repeat- containing protein; PAS domain containing protein. (1404 aa)
Dfer_5177PFAM: CheB methylesterase; KEGG: pna:Pnap_3575 CheB methylesterase. (345 aa)
Dfer_5570PFAM: CheB methylesterase; KEGG: npu:Npun_BF231 CheB methylesterase. (351 aa)
Dfer_5571Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1218 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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