STRINGSTRING
HA41_12300 HA41_12300 HA41_04225 HA41_04225 GCA_001743465_02285 GCA_001743465_02285 HA41_04280 HA41_04280 dapB dapB argD-2 argD-2 murE murE murF murF GCA_001743465_02193 GCA_001743465_02193 dapD dapD HA41_19150 HA41_19150 HA41_19105 HA41_19105 HA41_03450 HA41_03450 HA41_04845 HA41_04845 dapA dapA dapE dapE dapF dapF HA41_05485 HA41_05485 HA41_02055 HA41_02055 HA41_14100 HA41_14100 HA41_06235 HA41_06235 HA41_15670 HA41_15670 GCA_001743465_01177 GCA_001743465_01177 GCA_001743465_01370 GCA_001743465_01370 HA41_09545 HA41_09545 asd asd HA41_16445 HA41_16445 GCA_001743465_02661 GCA_001743465_02661 lysA lysA HA41_12770 HA41_12770
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HA41_12300Unannotated protein. (186 aa)
HA41_04225Unannotated protein; Belongs to the aspartate-semialdehyde dehydrogenase family. (335 aa)
GCA_001743465_02285Unannotated protein. (820 aa)
HA41_04280Unannotated protein. (473 aa)
dapBUnannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (271 aa)
argD-2Unannotated protein; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa)
murEUnannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (495 aa)
murFUnannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (452 aa)
GCA_001743465_02193Unannotated protein. (294 aa)
dapDUnannotated protein; Belongs to the transferase hexapeptide repeat family. (274 aa)
HA41_19150Unannotated protein. (235 aa)
HA41_19105Unannotated protein; Belongs to the aspartokinase family. (450 aa)
HA41_03450Unannotated protein. (451 aa)
HA41_04845Unannotated protein. (483 aa)
dapAUnannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (292 aa)
dapEUnannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (375 aa)
dapFUnannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (274 aa)
HA41_05485Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. (811 aa)
HA41_02055Unannotated protein. (251 aa)
HA41_14100Unannotated protein. (196 aa)
HA41_06235Unannotated protein; Belongs to the DapA family. (297 aa)
HA41_15670Unannotated protein. (495 aa)
GCA_001743465_01177Unannotated protein. (408 aa)
GCA_001743465_01370Unannotated protein. (444 aa)
HA41_09545Unannotated protein. (470 aa)
asdUnannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (369 aa)
HA41_16445Unannotated protein. (489 aa)
GCA_001743465_02661Unannotated protein. (510 aa)
lysAUnannotated protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (418 aa)
HA41_12770Unannotated protein. (482 aa)
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
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