(10 nodes) Lysine degradation network (Pantoea conspicua)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	HA41_03805	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (407 aa)
	HA41_18705	Unannotated protein; Belongs to the aldehyde dehydrogenase family. (457 aa)
	HA41_11780	Unannotated protein. (716 aa)
	HA41_01555	Unannotated protein. (474 aa)
	gabD	Unannotated protein; Belongs to the aldehyde dehydrogenase family. (485 aa)
	GCA_001743465_03365	Unannotated protein. (561 aa)
	HA41_10715	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (727 aa)
	HA41_19690	Unannotated protein. (327 aa)
	GCA_001743465_04712	Unannotated protein. (698 aa)
	gabD-2	Unannotated protein; Belongs to the aldehyde dehydrogenase family. (483 aa)

Your Current Organism:

Pantoea conspicua

NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001743465_03365	HA41_03805	GCA_001743465_03365	GCA_001743465_00370	Unannotated protein.	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.978
GCA_001743465_04712	HA41_03805	GCA_001743465_04712	GCA_001743465_00370	Unannotated protein.	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.832
GCA_001743465_04712	HA41_10715	GCA_001743465_04712	GCA_001743465_03387	Unannotated protein.	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.994
GCA_001743465_04712	HA41_18705	GCA_001743465_04712	GCA_001743465_00610	Unannotated protein.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
GCA_001743465_04712	gabD	GCA_001743465_04712	GCA_001743465_02697	Unannotated protein.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
GCA_001743465_04712	gabD-2	GCA_001743465_04712	GCA_001743465_04767	Unannotated protein.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
HA41_01555	HA41_03805	GCA_001743465_02201	GCA_001743465_00370	Unannotated protein.	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.999
HA41_03805	GCA_001743465_03365	GCA_001743465_00370	GCA_001743465_03365	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Unannotated protein.	0.978
HA41_03805	GCA_001743465_04712	GCA_001743465_00370	GCA_001743465_04712	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Unannotated protein.	0.832
HA41_03805	HA41_01555	GCA_001743465_00370	GCA_001743465_02201	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Unannotated protein.	0.999
HA41_03805	HA41_10715	GCA_001743465_00370	GCA_001743465_03387	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.809
HA41_10715	GCA_001743465_04712	GCA_001743465_03387	GCA_001743465_04712	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Unannotated protein.	0.994
HA41_10715	HA41_03805	GCA_001743465_03387	GCA_001743465_00370	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.809
HA41_10715	HA41_18705	GCA_001743465_03387	GCA_001743465_00610	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
HA41_10715	gabD	GCA_001743465_03387	GCA_001743465_02697	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
HA41_10715	gabD-2	GCA_001743465_03387	GCA_001743465_04767	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.646
HA41_18705	GCA_001743465_04712	GCA_001743465_00610	GCA_001743465_04712	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein.	0.646
HA41_18705	HA41_10715	GCA_001743465_00610	GCA_001743465_03387	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.646
HA41_18705	gabD	GCA_001743465_00610	GCA_001743465_02697	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.772
HA41_18705	gabD-2	GCA_001743465_00610	GCA_001743465_04767	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.774

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