STRINGSTRING
Nhal_0614 Nhal_0614 Nhal_0695 Nhal_0695 Nhal_1336 Nhal_1336 Nhal_2216 Nhal_2216 Nhal_2217 Nhal_2217 Nhal_2218 Nhal_2218 Nhal_2219 Nhal_2219 Nhal_3306 Nhal_3306 Nhal_3307 Nhal_3307 Nhal_3631 Nhal_3631 Nhal_3660 Nhal_3660
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Nhal_0614KEGG: bpy:Bphyt_0851 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like. (366 aa)
Nhal_0695KEGG: noc:Noc_2483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein. (456 aa)
Nhal_1336KEGG: tau:Tola_2044 undecaprenyl-phosphate galactose phosphotransferase, WbaP; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase. (504 aa)
Nhal_2216TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_0773 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (358 aa)
Nhal_2217Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (292 aa)
Nhal_2218dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
Nhal_2219dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (296 aa)
Nhal_3306PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: hch:HCH_06176 O-antigen and teichoic acid export protein. (504 aa)
Nhal_3307Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: pla:Plav_3095 hexapaptide repeat-containing transferase. (222 aa)
Nhal_3631PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; glycosyl transferase group 1; Methionine biosynthesis MetW protein; KEGG: noc:Noc_2178 glycosyl transferase family protein. (1237 aa)
Nhal_3660PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: pfl:PFL_5493 glycosyl transferase, group 2 family protein. (1307 aa)
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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