STRINGSTRING
Nhal_2223 Nhal_2223 Nhal_2224 Nhal_2224 Nhal_2225 Nhal_2225 Nhal_2226 Nhal_2226 Nhal_2227 Nhal_2227 Nhal_2228 Nhal_2228 Nhal_2229 Nhal_2229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Nhal_2223PFAM: Na+/solute symporter; KEGG: noc:Noc_0779 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (482 aa)
Nhal_2224PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0780 isochorismatase hydrolase. (243 aa)
Nhal_2225Amidase, hydantoinase/carbamoylase family; KEGG: noc:Noc_0781 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein. (412 aa)
Nhal_2226KEGG: noc:Noc_0782 hypothetical protein. (163 aa)
Nhal_2227PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0783 signal transduction histidine kinase. (530 aa)
Nhal_2228KEGG: noc:Noc_0784 hypothetical protein. (233 aa)
Nhal_2229PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: noc:Noc_0785 fis family two component transcriptional regulator. (453 aa)
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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