(10 nodes) Transcription export complex 2, and Centrosome duplication network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000003164	annotation not available (171 aa)
	ENSNMLP00000003503	Kruppel-like factor 1 (erythroid). (352 aa)
	ENSNMLP00000004051	annotation not available (475 aa)
	ENSNMLP00000005861	annotation not available (82 aa)
	ENSNMLP00000005891	Centrin 4. (171 aa)
	ENSNMLP00000007551	annotation not available (158 aa)
	ENSNMLP00000009791	ENY2 transcription and export complex 2 subunit. (94 aa)
	ENSNMLP00000015383	Si:zfos-452g4.1. (348 aa)
	ENSNMLP00000016038	Centrin 3. (169 aa)
	ENSNMLP00000023746	annotation not available (218 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003164	ENSNMLP00000004051	annotation not available	annotation not available	0.464
ENSNMLP00000003164	ENSNMLP00000007551	annotation not available	annotation not available	0.954
ENSNMLP00000003164	ENSNMLP00000009791	annotation not available	ENY2 transcription and export complex 2 subunit.	0.929
ENSNMLP00000003164	ENSNMLP00000015383	annotation not available	Si:zfos-452g4.1.	0.971
ENSNMLP00000003164	ENSNMLP00000016038	annotation not available	Centrin 3.	0.861
ENSNMLP00000003164	ENSNMLP00000023746	annotation not available	annotation not available	0.753
ENSNMLP00000004051	ENSNMLP00000003164	annotation not available	annotation not available	0.464
ENSNMLP00000004051	ENSNMLP00000005891	annotation not available	Centrin 4.	0.464
ENSNMLP00000004051	ENSNMLP00000016038	annotation not available	Centrin 3.	0.464
ENSNMLP00000005861	ENSNMLP00000007551	annotation not available	annotation not available	0.992
ENSNMLP00000005861	ENSNMLP00000009791	annotation not available	ENY2 transcription and export complex 2 subunit.	0.407
ENSNMLP00000005861	ENSNMLP00000015383	annotation not available	Si:zfos-452g4.1.	0.711
ENSNMLP00000005891	ENSNMLP00000004051	Centrin 4.	annotation not available	0.464
ENSNMLP00000005891	ENSNMLP00000007551	Centrin 4.	annotation not available	0.954
ENSNMLP00000005891	ENSNMLP00000009791	Centrin 4.	ENY2 transcription and export complex 2 subunit.	0.929
ENSNMLP00000005891	ENSNMLP00000015383	Centrin 4.	Si:zfos-452g4.1.	0.971
ENSNMLP00000005891	ENSNMLP00000016038	Centrin 4.	Centrin 3.	0.857
ENSNMLP00000005891	ENSNMLP00000023746	Centrin 4.	annotation not available	0.753
ENSNMLP00000007551	ENSNMLP00000003164	annotation not available	annotation not available	0.954
ENSNMLP00000007551	ENSNMLP00000005861	annotation not available	annotation not available	0.992