(10 nodes) Mixed, incl. Kringle, and Endothelial cell morphogenesis network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000003904	annotation not available (257 aa)
	ENSNMLP00000004184	annotation not available (282 aa)
	HABP2	Hyaluronan binding protein 2. (538 aa)
	ENSNMLP00000005836	annotation not available (521 aa)
	ENSNMLP00000007467	annotation not available (350 aa)
	ENSNMLP00000021019	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a. (613 aa)
	PTK7	Protein tyrosine kinase 7 (inactive). (1074 aa)
	ENSNMLP00000024480	Receptor-interacting serine-threonine kinase 4. (800 aa)
	ENSNMLP00000032461	annotation not available (569 aa)
	ENSNMLP00000037954	annotation not available (598 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000003904	ENSNMLP00000004184	ENSNMLP00000003904	ENSNMLP00000004184	annotation not available	annotation not available	0.620
ENSNMLP00000003904	ENSNMLP00000005836	ENSNMLP00000003904	ENSNMLP00000005836	annotation not available	annotation not available	0.549
ENSNMLP00000003904	ENSNMLP00000007467	ENSNMLP00000003904	ENSNMLP00000007467	annotation not available	annotation not available	0.962
ENSNMLP00000003904	ENSNMLP00000021019	ENSNMLP00000003904	ENSNMLP00000021019	annotation not available	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.835
ENSNMLP00000003904	ENSNMLP00000024480	ENSNMLP00000003904	ENSNMLP00000024480	annotation not available	Receptor-interacting serine-threonine kinase 4.	0.852
ENSNMLP00000003904	ENSNMLP00000032461	ENSNMLP00000003904	ENSNMLP00000032461	annotation not available	annotation not available	0.555
ENSNMLP00000003904	ENSNMLP00000037954	ENSNMLP00000003904	ENSNMLP00000037954	annotation not available	annotation not available	0.835
ENSNMLP00000003904	HABP2	ENSNMLP00000003904	ENSNMLP00000005723	annotation not available	Hyaluronan binding protein 2.	0.553
ENSNMLP00000003904	PTK7	ENSNMLP00000003904	ENSNMLP00000024392	annotation not available	Protein tyrosine kinase 7 (inactive).	0.971
ENSNMLP00000004184	ENSNMLP00000003904	ENSNMLP00000004184	ENSNMLP00000003904	annotation not available	annotation not available	0.620
ENSNMLP00000004184	ENSNMLP00000005836	ENSNMLP00000004184	ENSNMLP00000005836	annotation not available	annotation not available	0.620
ENSNMLP00000004184	ENSNMLP00000007467	ENSNMLP00000004184	ENSNMLP00000007467	annotation not available	annotation not available	0.948
ENSNMLP00000004184	ENSNMLP00000021019	ENSNMLP00000004184	ENSNMLP00000021019	annotation not available	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.858
ENSNMLP00000004184	ENSNMLP00000024480	ENSNMLP00000004184	ENSNMLP00000024480	annotation not available	Receptor-interacting serine-threonine kinase 4.	0.927
ENSNMLP00000004184	ENSNMLP00000032461	ENSNMLP00000004184	ENSNMLP00000032461	annotation not available	annotation not available	0.620
ENSNMLP00000004184	ENSNMLP00000037954	ENSNMLP00000004184	ENSNMLP00000037954	annotation not available	annotation not available	0.858
ENSNMLP00000004184	HABP2	ENSNMLP00000004184	ENSNMLP00000005723	annotation not available	Hyaluronan binding protein 2.	0.620
ENSNMLP00000004184	PTK7	ENSNMLP00000004184	ENSNMLP00000024392	annotation not available	Protein tyrosine kinase 7 (inactive).	0.883
ENSNMLP00000005836	ENSNMLP00000003904	ENSNMLP00000005836	ENSNMLP00000003904	annotation not available	annotation not available	0.549
ENSNMLP00000005836	ENSNMLP00000004184	ENSNMLP00000005836	ENSNMLP00000004184	annotation not available	annotation not available	0.620