(13 nodes) Ligand-receptor interactions, and Patched family network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000903	Cell adhesion associated, oncogene regulated. (1103 aa)
	ENSNMLP00000003161	annotation not available (429 aa)
	ENSNMLP00000014291	Desert hedgehog signaling molecule. (446 aa)
	ENSNMLP00000024265	Patched 1. (1227 aa)
	ENSNMLP00000028134	Hedgehog interacting protein. (699 aa)
	ENSNMLP00000031059	Patched 2. (1298 aa)
	ENSNMLP00000031354	annotation not available (265 aa)
	ENSNMLP00000032928	Dispatched RND transporter family member 3. (1268 aa)
	ENSNMLP00000035374	annotation not available (83 aa)
	ENSNMLP00000038928	Growth arrest-specific 1a. (245 aa)
	ENSNMLP00000041553	Sonic hedgehog signaling molecule a. (407 aa)
	ENSNMLP00000044368	annotation not available (269 aa)
	ENSNMLP00000044876	Dispatched homolog 1 (Drosophila). (1389 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000903	ENSNMLP00000003161	Cell adhesion associated, oncogene regulated.	annotation not available	0.984
ENSNMLP00000000903	ENSNMLP00000014291	Cell adhesion associated, oncogene regulated.	Desert hedgehog signaling molecule.	0.984
ENSNMLP00000000903	ENSNMLP00000024265	Cell adhesion associated, oncogene regulated.	Patched 1.	0.940
ENSNMLP00000000903	ENSNMLP00000028134	Cell adhesion associated, oncogene regulated.	Hedgehog interacting protein.	0.571
ENSNMLP00000000903	ENSNMLP00000031059	Cell adhesion associated, oncogene regulated.	Patched 2.	0.940
ENSNMLP00000000903	ENSNMLP00000031354	Cell adhesion associated, oncogene regulated.	annotation not available	0.923
ENSNMLP00000000903	ENSNMLP00000035374	Cell adhesion associated, oncogene regulated.	annotation not available	0.971
ENSNMLP00000000903	ENSNMLP00000038928	Cell adhesion associated, oncogene regulated.	Growth arrest-specific 1a.	0.916
ENSNMLP00000000903	ENSNMLP00000041553	Cell adhesion associated, oncogene regulated.	Sonic hedgehog signaling molecule a.	0.985
ENSNMLP00000000903	ENSNMLP00000044368	Cell adhesion associated, oncogene regulated.	annotation not available	0.801
ENSNMLP00000000903	ENSNMLP00000044876	Cell adhesion associated, oncogene regulated.	Dispatched homolog 1 (Drosophila).	0.521
ENSNMLP00000003161	ENSNMLP00000000903	annotation not available	Cell adhesion associated, oncogene regulated.	0.984
ENSNMLP00000003161	ENSNMLP00000014291	annotation not available	Desert hedgehog signaling molecule.	0.843
ENSNMLP00000003161	ENSNMLP00000024265	annotation not available	Patched 1.	0.974
ENSNMLP00000003161	ENSNMLP00000028134	annotation not available	Hedgehog interacting protein.	0.971
ENSNMLP00000003161	ENSNMLP00000031059	annotation not available	Patched 2.	0.980
ENSNMLP00000003161	ENSNMLP00000031354	annotation not available	annotation not available	0.919
ENSNMLP00000003161	ENSNMLP00000032928	annotation not available	Dispatched RND transporter family member 3.	0.875
ENSNMLP00000003161	ENSNMLP00000038928	annotation not available	Growth arrest-specific 1a.	0.918
ENSNMLP00000003161	ENSNMLP00000041553	annotation not available	Sonic hedgehog signaling molecule a.	0.847