(14 nodes) Transcription factor TFIIH holo complex, and Transcription factor TFIIE complex network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000011580	TATA box binding protein like 2. (291 aa)
	ENSNMLP00000015626	MNAT1 component of CDK activating kinase. (351 aa)
	ENSNMLP00000017292	General transcription factor IIA, 2. (109 aa)
	ENSNMLP00000025026	Cyclin H. (326 aa)
	ENSNMLP00000026015	Excision repair cross-complementation group 2. (760 aa)
	ENSNMLP00000027278	General transcription factor IIB. (318 aa)
	ENSNMLP00000028832	General transcription factor IIH, polypeptide 3. (307 aa)
	ENSNMLP00000028878	General transcription factor IIH, polypeptide 2. (396 aa)
	ENSNMLP00000031135	General transcription factor IIA, 1. (362 aa)
	ENSNMLP00000031971	General transcription factor IIE, polypeptide 2, beta. (276 aa)
	ENSNMLP00000032391	General transcription factor IIH, polypeptide 4. (469 aa)
	ENSNMLP00000035575	General transcription factor IIH, polypeptide 5. (71 aa)
	ENSNMLP00000040055	General transcription factor IIH, polypeptide 1. (542 aa)
	ENSNMLP00000043771	General transcription factor IIE, polypeptide 1, alpha. (231 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000011580	ENSNMLP00000015626	TATA box binding protein like 2.	MNAT1 component of CDK activating kinase.	0.968
ENSNMLP00000011580	ENSNMLP00000017292	TATA box binding protein like 2.	General transcription factor IIA, 2.	0.990
ENSNMLP00000011580	ENSNMLP00000025026	TATA box binding protein like 2.	Cyclin H.	0.911
ENSNMLP00000011580	ENSNMLP00000026015	TATA box binding protein like 2.	Excision repair cross-complementation group 2.	0.981
ENSNMLP00000011580	ENSNMLP00000027278	TATA box binding protein like 2.	General transcription factor IIB.	0.992
ENSNMLP00000011580	ENSNMLP00000028832	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 3.	0.985
ENSNMLP00000011580	ENSNMLP00000028878	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 2.	0.961
ENSNMLP00000011580	ENSNMLP00000031135	TATA box binding protein like 2.	General transcription factor IIA, 1.	0.984
ENSNMLP00000011580	ENSNMLP00000031971	TATA box binding protein like 2.	General transcription factor IIE, polypeptide 2, beta.	0.969
ENSNMLP00000011580	ENSNMLP00000032391	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 4.	0.983
ENSNMLP00000011580	ENSNMLP00000035575	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 5.	0.939
ENSNMLP00000011580	ENSNMLP00000040055	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 1.	0.972
ENSNMLP00000011580	ENSNMLP00000043771	TATA box binding protein like 2.	General transcription factor IIE, polypeptide 1, alpha.	0.991
ENSNMLP00000015626	ENSNMLP00000011580	MNAT1 component of CDK activating kinase.	TATA box binding protein like 2.	0.968
ENSNMLP00000015626	ENSNMLP00000017292	MNAT1 component of CDK activating kinase.	General transcription factor IIA, 2.	0.985
ENSNMLP00000015626	ENSNMLP00000025026	MNAT1 component of CDK activating kinase.	Cyclin H.	0.999
ENSNMLP00000015626	ENSNMLP00000026015	MNAT1 component of CDK activating kinase.	Excision repair cross-complementation group 2.	0.999
ENSNMLP00000015626	ENSNMLP00000027278	MNAT1 component of CDK activating kinase.	General transcription factor IIB.	0.991
ENSNMLP00000015626	ENSNMLP00000028832	MNAT1 component of CDK activating kinase.	General transcription factor IIH, polypeptide 3.	0.998
ENSNMLP00000015626	ENSNMLP00000028878	MNAT1 component of CDK activating kinase.	General transcription factor IIH, polypeptide 2.	0.998