(5 nodes) SLIK (SAGA-like) complex, and P-TEFb complex binding network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000005217	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (631 aa)
	ENSNMLP00000012095	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
	ENSNMLP00000019856	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (154 aa)
	ENSNMLP00000021513	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (590 aa)
	ENSNMLP00000033281	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (175 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000005217	ENSNMLP00000012095	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000005217	ENSNMLP00000019856	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000005217	ENSNMLP00000021513	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.999
ENSNMLP00000005217	ENSNMLP00000033281	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000012095	ENSNMLP00000005217	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000012095	ENSNMLP00000019856	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000012095	ENSNMLP00000021513	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.999
ENSNMLP00000012095	ENSNMLP00000033281	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000019856	ENSNMLP00000005217	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000019856	ENSNMLP00000012095	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000019856	ENSNMLP00000021513	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.999
ENSNMLP00000019856	ENSNMLP00000033281	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000021513	ENSNMLP00000005217	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000021513	ENSNMLP00000012095	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000021513	ENSNMLP00000019856	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000021513	ENSNMLP00000033281	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000033281	ENSNMLP00000005217	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000033281	ENSNMLP00000012095	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000033281	ENSNMLP00000019856	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000033281	ENSNMLP00000021513	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.999