(7 nodes) Collagen, and Fibrillar collagens C-terminal domain network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL8A1	Collagen type VIII alpha 1 chain. (694 aa)
	ENSNMLP00000022169	annotation not available (406 aa)
	ENSNMLP00000024177	annotation not available (712 aa)
	ENSNMLP00000029419	annotation not available (454 aa)
	ENSNMLP00000030721	annotation not available (670 aa)
	ENSNMLP00000036883	annotation not available (300 aa)
	ENSNMLP00000036884	annotation not available (291 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL8A1	ENSNMLP00000022169	ENSNMLP00000002365	ENSNMLP00000022169	Collagen type VIII alpha 1 chain.	annotation not available	0.550
COL8A1	ENSNMLP00000029419	ENSNMLP00000002365	ENSNMLP00000029419	Collagen type VIII alpha 1 chain.	annotation not available	0.935
COL8A1	ENSNMLP00000036883	ENSNMLP00000002365	ENSNMLP00000036883	Collagen type VIII alpha 1 chain.	annotation not available	0.900
COL8A1	ENSNMLP00000036884	ENSNMLP00000002365	ENSNMLP00000036884	Collagen type VIII alpha 1 chain.	annotation not available	0.823
ENSNMLP00000022169	COL8A1	ENSNMLP00000022169	ENSNMLP00000002365	annotation not available	Collagen type VIII alpha 1 chain.	0.550
ENSNMLP00000022169	ENSNMLP00000029419	ENSNMLP00000022169	ENSNMLP00000029419	annotation not available	annotation not available	0.933
ENSNMLP00000022169	ENSNMLP00000030721	ENSNMLP00000022169	ENSNMLP00000030721	annotation not available	annotation not available	0.547
ENSNMLP00000022169	ENSNMLP00000036883	ENSNMLP00000022169	ENSNMLP00000036883	annotation not available	annotation not available	0.857
ENSNMLP00000022169	ENSNMLP00000036884	ENSNMLP00000022169	ENSNMLP00000036884	annotation not available	annotation not available	0.904
ENSNMLP00000024177	ENSNMLP00000029419	ENSNMLP00000024177	ENSNMLP00000029419	annotation not available	annotation not available	0.955
ENSNMLP00000024177	ENSNMLP00000036883	ENSNMLP00000024177	ENSNMLP00000036883	annotation not available	annotation not available	0.824
ENSNMLP00000024177	ENSNMLP00000036884	ENSNMLP00000024177	ENSNMLP00000036884	annotation not available	annotation not available	0.461
ENSNMLP00000029419	COL8A1	ENSNMLP00000029419	ENSNMLP00000002365	annotation not available	Collagen type VIII alpha 1 chain.	0.935
ENSNMLP00000029419	ENSNMLP00000022169	ENSNMLP00000029419	ENSNMLP00000022169	annotation not available	annotation not available	0.933
ENSNMLP00000029419	ENSNMLP00000024177	ENSNMLP00000029419	ENSNMLP00000024177	annotation not available	annotation not available	0.955
ENSNMLP00000029419	ENSNMLP00000030721	ENSNMLP00000029419	ENSNMLP00000030721	annotation not available	annotation not available	0.934
ENSNMLP00000030721	ENSNMLP00000022169	ENSNMLP00000030721	ENSNMLP00000022169	annotation not available	annotation not available	0.547
ENSNMLP00000030721	ENSNMLP00000029419	ENSNMLP00000030721	ENSNMLP00000029419	annotation not available	annotation not available	0.934
ENSNMLP00000030721	ENSNMLP00000036883	ENSNMLP00000030721	ENSNMLP00000036883	annotation not available	annotation not available	0.827
ENSNMLP00000030721	ENSNMLP00000036884	ENSNMLP00000030721	ENSNMLP00000036884	annotation not available	annotation not available	0.873