(10 nodes) Processing of SMDT1 network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000001086	SPG7 matrix AAA peptidase subunit, paraplegin. (808 aa)
	ENSNMLP00000007054	Si:ch1073-174d20.2. (761 aa)
	ENSNMLP00000014832	annotation not available (309 aa)
	ENSNMLP00000017318	YME1-like 1b. (723 aa)
	ENSNMLP00000018580	Matrix AAA peptidase interacting protein 1. (243 aa)
	ENSNMLP00000021238	YME1-like 1a. (727 aa)
	ENSNMLP00000028455	Presenilin associated, rhomboid-like a. (382 aa)
	ENSNMLP00000034748	Prohibitin 2b. (306 aa)
	ENSNMLP00000040462	Prohibitin. (271 aa)
	ENSNMLP00000040902	Stomatin (EPB72)-like 2. (347 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001086	ENSNMLP00000007054	SPG7 matrix AAA peptidase subunit, paraplegin.	Si:ch1073-174d20.2.	0.934
ENSNMLP00000001086	ENSNMLP00000014832	SPG7 matrix AAA peptidase subunit, paraplegin.	annotation not available	0.822
ENSNMLP00000001086	ENSNMLP00000017318	SPG7 matrix AAA peptidase subunit, paraplegin.	YME1-like 1b.	0.887
ENSNMLP00000001086	ENSNMLP00000018580	SPG7 matrix AAA peptidase subunit, paraplegin.	Matrix AAA peptidase interacting protein 1.	0.698
ENSNMLP00000001086	ENSNMLP00000021238	SPG7 matrix AAA peptidase subunit, paraplegin.	YME1-like 1a.	0.887
ENSNMLP00000001086	ENSNMLP00000028455	SPG7 matrix AAA peptidase subunit, paraplegin.	Presenilin associated, rhomboid-like a.	0.644
ENSNMLP00000001086	ENSNMLP00000034748	SPG7 matrix AAA peptidase subunit, paraplegin.	Prohibitin 2b.	0.949
ENSNMLP00000001086	ENSNMLP00000040462	SPG7 matrix AAA peptidase subunit, paraplegin.	Prohibitin.	0.963
ENSNMLP00000001086	ENSNMLP00000040902	SPG7 matrix AAA peptidase subunit, paraplegin.	Stomatin (EPB72)-like 2.	0.827
ENSNMLP00000007054	ENSNMLP00000001086	Si:ch1073-174d20.2.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.934
ENSNMLP00000007054	ENSNMLP00000014832	Si:ch1073-174d20.2.	annotation not available	0.822
ENSNMLP00000007054	ENSNMLP00000017318	Si:ch1073-174d20.2.	YME1-like 1b.	0.888
ENSNMLP00000007054	ENSNMLP00000018580	Si:ch1073-174d20.2.	Matrix AAA peptidase interacting protein 1.	0.689
ENSNMLP00000007054	ENSNMLP00000021238	Si:ch1073-174d20.2.	YME1-like 1a.	0.889
ENSNMLP00000007054	ENSNMLP00000028455	Si:ch1073-174d20.2.	Presenilin associated, rhomboid-like a.	0.637
ENSNMLP00000007054	ENSNMLP00000034748	Si:ch1073-174d20.2.	Prohibitin 2b.	0.948
ENSNMLP00000007054	ENSNMLP00000040462	Si:ch1073-174d20.2.	Prohibitin.	0.962
ENSNMLP00000007054	ENSNMLP00000040902	Si:ch1073-174d20.2.	Stomatin (EPB72)-like 2.	0.839
ENSNMLP00000014832	ENSNMLP00000001086	annotation not available	SPG7 matrix AAA peptidase subunit, paraplegin.	0.822
ENSNMLP00000014832	ENSNMLP00000007054	annotation not available	Si:ch1073-174d20.2.	0.822