(5 nodes) Yip1 domain, and Derlin-1-VIMP complex network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000007995	Yip1 domain family, member 3. (299 aa)
	ENSNMLP00000010683	annotation not available (193 aa)
	ENSNMLP00000029716	Yip1 domain family, member 2. (275 aa)
	ENSNMLP00000033847	Yip1 domain family, member 4. (237 aa)
	ENSNMLP00000036486	Yip1 interacting factor homolog A (S. cerevisiae). (301 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000007995	ENSNMLP00000010683	Yip1 domain family, member 3.	annotation not available	0.786
ENSNMLP00000007995	ENSNMLP00000029716	Yip1 domain family, member 3.	Yip1 domain family, member 2.	0.585
ENSNMLP00000007995	ENSNMLP00000033847	Yip1 domain family, member 3.	Yip1 domain family, member 4.	0.852
ENSNMLP00000007995	ENSNMLP00000036486	Yip1 domain family, member 3.	Yip1 interacting factor homolog A (S. cerevisiae).	0.536
ENSNMLP00000010683	ENSNMLP00000007995	annotation not available	Yip1 domain family, member 3.	0.786
ENSNMLP00000010683	ENSNMLP00000029716	annotation not available	Yip1 domain family, member 2.	0.780
ENSNMLP00000010683	ENSNMLP00000036486	annotation not available	Yip1 interacting factor homolog A (S. cerevisiae).	0.848
ENSNMLP00000029716	ENSNMLP00000007995	Yip1 domain family, member 2.	Yip1 domain family, member 3.	0.585
ENSNMLP00000029716	ENSNMLP00000010683	Yip1 domain family, member 2.	annotation not available	0.780
ENSNMLP00000029716	ENSNMLP00000033847	Yip1 domain family, member 2.	Yip1 domain family, member 4.	0.833
ENSNMLP00000029716	ENSNMLP00000036486	Yip1 domain family, member 2.	Yip1 interacting factor homolog A (S. cerevisiae).	0.408
ENSNMLP00000033847	ENSNMLP00000007995	Yip1 domain family, member 4.	Yip1 domain family, member 3.	0.852
ENSNMLP00000033847	ENSNMLP00000029716	Yip1 domain family, member 4.	Yip1 domain family, member 2.	0.833
ENSNMLP00000033847	ENSNMLP00000036486	Yip1 domain family, member 4.	Yip1 interacting factor homolog A (S. cerevisiae).	0.839
ENSNMLP00000036486	ENSNMLP00000007995	Yip1 interacting factor homolog A (S. cerevisiae).	Yip1 domain family, member 3.	0.536
ENSNMLP00000036486	ENSNMLP00000010683	Yip1 interacting factor homolog A (S. cerevisiae).	annotation not available	0.848
ENSNMLP00000036486	ENSNMLP00000029716	Yip1 interacting factor homolog A (S. cerevisiae).	Yip1 domain family, member 2.	0.408
ENSNMLP00000036486	ENSNMLP00000033847	Yip1 interacting factor homolog A (S. cerevisiae).	Yip1 domain family, member 4.	0.839