(6 nodes) Mixed, incl. Calcium-independent protein kinase C activity, and Temperature-gated ion channel activity network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000004870	Transient receptor potential cation channel, subfamily V, member 4. (774 aa)
	ENSNMLP00000015685	Protein kinase C, eta, a. (682 aa)
	ENSNMLP00000019999	Protein kinase C, alpha, b. (670 aa)
	ENSNMLP00000032507	Transient receptor potential cation channel, subfamily A, member 1b. (1088 aa)
	ENSNMLP00000036045	Protein kinase C, delta a. (646 aa)
	ENSNMLP00000045043	annotation not available (345 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000004870	ENSNMLP00000015685	Transient receptor potential cation channel, subfamily V, member 4.	Protein kinase C, eta, a.	0.721
ENSNMLP00000004870	ENSNMLP00000019999	Transient receptor potential cation channel, subfamily V, member 4.	Protein kinase C, alpha, b.	0.591
ENSNMLP00000004870	ENSNMLP00000032507	Transient receptor potential cation channel, subfamily V, member 4.	Transient receptor potential cation channel, subfamily A, member 1b.	0.624
ENSNMLP00000004870	ENSNMLP00000036045	Transient receptor potential cation channel, subfamily V, member 4.	Protein kinase C, delta a.	0.638
ENSNMLP00000015685	ENSNMLP00000004870	Protein kinase C, eta, a.	Transient receptor potential cation channel, subfamily V, member 4.	0.721
ENSNMLP00000015685	ENSNMLP00000019999	Protein kinase C, eta, a.	Protein kinase C, alpha, b.	0.649
ENSNMLP00000015685	ENSNMLP00000032507	Protein kinase C, eta, a.	Transient receptor potential cation channel, subfamily A, member 1b.	0.845
ENSNMLP00000015685	ENSNMLP00000036045	Protein kinase C, eta, a.	Protein kinase C, delta a.	0.635
ENSNMLP00000015685	ENSNMLP00000045043	Protein kinase C, eta, a.	annotation not available	0.641
ENSNMLP00000019999	ENSNMLP00000004870	Protein kinase C, alpha, b.	Transient receptor potential cation channel, subfamily V, member 4.	0.591
ENSNMLP00000019999	ENSNMLP00000015685	Protein kinase C, alpha, b.	Protein kinase C, eta, a.	0.649
ENSNMLP00000019999	ENSNMLP00000036045	Protein kinase C, alpha, b.	Protein kinase C, delta a.	0.783
ENSNMLP00000019999	ENSNMLP00000045043	Protein kinase C, alpha, b.	annotation not available	0.679
ENSNMLP00000032507	ENSNMLP00000004870	Transient receptor potential cation channel, subfamily A, member 1b.	Transient receptor potential cation channel, subfamily V, member 4.	0.624
ENSNMLP00000032507	ENSNMLP00000015685	Transient receptor potential cation channel, subfamily A, member 1b.	Protein kinase C, eta, a.	0.845
ENSNMLP00000032507	ENSNMLP00000036045	Transient receptor potential cation channel, subfamily A, member 1b.	Protein kinase C, delta a.	0.740
ENSNMLP00000036045	ENSNMLP00000004870	Protein kinase C, delta a.	Transient receptor potential cation channel, subfamily V, member 4.	0.638
ENSNMLP00000036045	ENSNMLP00000015685	Protein kinase C, delta a.	Protein kinase C, eta, a.	0.635
ENSNMLP00000036045	ENSNMLP00000019999	Protein kinase C, delta a.	Protein kinase C, alpha, b.	0.783
ENSNMLP00000036045	ENSNMLP00000032507	Protein kinase C, delta a.	Transient receptor potential cation channel, subfamily A, member 1b.	0.740