(12 nodes) Regulation of inclusion body assembly, and SMAC (DIABLO) binds to IAPs network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000739	annotation not available (696 aa)
	ENSNMLP00000000817	annotation not available (646 aa)
	ENSNMLP00000000823	annotation not available (596 aa)
	ENSNMLP00000000830	annotation not available (744 aa)
	ENSNMLP00000000834	annotation not available (557 aa)
	ENSNMLP00000000838	annotation not available (557 aa)
	ENSNMLP00000000843	annotation not available (707 aa)
	ENSNMLP00000007992	annotation not available (232 aa)
	ENSNMLP00000008014	annotation not available (642 aa)
	ENSNMLP00000013604	annotation not available (232 aa)
	ENSNMLP00000020665	Diablo, IAP-binding mitochondrial protein a. (248 aa)
	ENSNMLP00000027024	Si:dkey-33c12.12. (435 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000739	ENSNMLP00000000823	annotation not available	annotation not available	0.934
ENSNMLP00000000739	ENSNMLP00000000834	annotation not available	annotation not available	0.934
ENSNMLP00000000739	ENSNMLP00000000838	annotation not available	annotation not available	0.933
ENSNMLP00000000739	ENSNMLP00000007992	annotation not available	annotation not available	0.784
ENSNMLP00000000739	ENSNMLP00000013604	annotation not available	annotation not available	0.784
ENSNMLP00000000739	ENSNMLP00000020665	annotation not available	Diablo, IAP-binding mitochondrial protein a.	0.784
ENSNMLP00000000739	ENSNMLP00000027024	annotation not available	Si:dkey-33c12.12.	0.500
ENSNMLP00000000817	ENSNMLP00000000823	annotation not available	annotation not available	0.931
ENSNMLP00000000817	ENSNMLP00000000834	annotation not available	annotation not available	0.931
ENSNMLP00000000817	ENSNMLP00000000838	annotation not available	annotation not available	0.930
ENSNMLP00000000817	ENSNMLP00000007992	annotation not available	annotation not available	0.784
ENSNMLP00000000817	ENSNMLP00000013604	annotation not available	annotation not available	0.784
ENSNMLP00000000817	ENSNMLP00000020665	annotation not available	Diablo, IAP-binding mitochondrial protein a.	0.784
ENSNMLP00000000817	ENSNMLP00000027024	annotation not available	Si:dkey-33c12.12.	0.500
ENSNMLP00000000823	ENSNMLP00000000739	annotation not available	annotation not available	0.934
ENSNMLP00000000823	ENSNMLP00000000817	annotation not available	annotation not available	0.931
ENSNMLP00000000823	ENSNMLP00000000830	annotation not available	annotation not available	0.939
ENSNMLP00000000823	ENSNMLP00000000843	annotation not available	annotation not available	0.933
ENSNMLP00000000823	ENSNMLP00000007992	annotation not available	annotation not available	0.784
ENSNMLP00000000823	ENSNMLP00000008014	annotation not available	annotation not available	0.931