(13 nodes) Transport of the SLBP independent Mature mRNA network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NUP54	Nucleoporin 54. (530 aa)
	ENSNMLP00000002437	annotation not available (244 aa)
	ENSNMLP00000002906	annotation not available (251 aa)
	ENSNMLP00000002912	annotation not available (206 aa)
	ENSNMLP00000002923	annotation not available (814 aa)
	ENSNMLP00000004479	Nucleoporin 88. (692 aa)
	ENSNMLP00000016115	Nucleoporin 160. (1398 aa)
	ENSNMLP00000018726	Nucleoporin 58. (584 aa)
	ENSNMLP00000024835	Nucleoporin 107. (857 aa)
	ENSNMLP00000027529	SEH1-like (S. cerevisiae). (416 aa)
	ENSNMLP00000030116	Nucleoporin 85. (651 aa)
	NUP62	Nucleoporin 62. (548 aa)
	ENSNMLP00000035805	SEC13 homolog, nuclear pore and COPII coat complex component. (340 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000002437	ENSNMLP00000002906	ENSNMLP00000002437	ENSNMLP00000002906	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000002912	ENSNMLP00000002437	ENSNMLP00000002912	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000002923	ENSNMLP00000002437	ENSNMLP00000002923	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000004479	ENSNMLP00000002437	ENSNMLP00000004479	annotation not available	Nucleoporin 88.	0.998
ENSNMLP00000002437	ENSNMLP00000016115	ENSNMLP00000002437	ENSNMLP00000016115	annotation not available	Nucleoporin 160.	0.998
ENSNMLP00000002437	ENSNMLP00000018726	ENSNMLP00000002437	ENSNMLP00000018726	annotation not available	Nucleoporin 58.	0.986
ENSNMLP00000002437	ENSNMLP00000024835	ENSNMLP00000002437	ENSNMLP00000024835	annotation not available	Nucleoporin 107.	0.999
ENSNMLP00000002437	ENSNMLP00000027529	ENSNMLP00000002437	ENSNMLP00000027529	annotation not available	SEH1-like (S. cerevisiae).	0.998
ENSNMLP00000002437	ENSNMLP00000030116	ENSNMLP00000002437	ENSNMLP00000030116	annotation not available	Nucleoporin 85.	0.999
ENSNMLP00000002437	ENSNMLP00000035805	ENSNMLP00000002437	ENSNMLP00000035805	annotation not available	SEC13 homolog, nuclear pore and COPII coat complex component.	0.998
ENSNMLP00000002437	NUP54	ENSNMLP00000002437	ENSNMLP00000001153	annotation not available	Nucleoporin 54.	0.998
ENSNMLP00000002437	NUP62	ENSNMLP00000002437	ENSNMLP00000030925	annotation not available	Nucleoporin 62.	0.986
ENSNMLP00000002906	ENSNMLP00000002437	ENSNMLP00000002906	ENSNMLP00000002437	annotation not available	annotation not available	0.989
ENSNMLP00000002906	ENSNMLP00000002912	ENSNMLP00000002906	ENSNMLP00000002912	annotation not available	annotation not available	0.903
ENSNMLP00000002906	ENSNMLP00000002923	ENSNMLP00000002906	ENSNMLP00000002923	annotation not available	annotation not available	0.989
ENSNMLP00000002906	ENSNMLP00000004479	ENSNMLP00000002906	ENSNMLP00000004479	annotation not available	Nucleoporin 88.	0.998
ENSNMLP00000002906	ENSNMLP00000016115	ENSNMLP00000002906	ENSNMLP00000016115	annotation not available	Nucleoporin 160.	0.998
ENSNMLP00000002906	ENSNMLP00000018726	ENSNMLP00000002906	ENSNMLP00000018726	annotation not available	Nucleoporin 58.	0.986
ENSNMLP00000002906	ENSNMLP00000024835	ENSNMLP00000002906	ENSNMLP00000024835	annotation not available	Nucleoporin 107.	0.999
ENSNMLP00000002906	ENSNMLP00000027529	ENSNMLP00000002906	ENSNMLP00000027529	annotation not available	SEH1-like (S. cerevisiae).	0.998