(11 nodes) Phasic smooth muscle contraction network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000010590	annotation not available (411 aa)
	ENSNMLP00000003788	Endothelin receptor Ba. (417 aa)
	ENSNMLP00000008368	T-box transcription factor 3a. (675 aa)
	ENSNMLP00000008612	T-box transcription factor 3b. (506 aa)
	ENSNMLP00000012234	Purinergic receptor P2X, ligand-gated ion channel, 3b. (397 aa)
	ENSNMLP00000022738	annotation not available (110 aa)
	ENSNMLP00000024435	Glial cell derived neurotrophic factor a. (244 aa)
	ENSNMLP00000025665	Endothelin 2. (164 aa)
	ENSNMLP00000031828	Endothelin receptor type Bb. (428 aa)
	ENSNMLP00000034330	annotation not available (157 aa)
	ENSNMLP00000036376	5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled. (448 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003788	ENSNMLP00000010590	Endothelin receptor Ba.	annotation not available	0.822
ENSNMLP00000003788	ENSNMLP00000022738	Endothelin receptor Ba.	annotation not available	0.987
ENSNMLP00000003788	ENSNMLP00000025665	Endothelin receptor Ba.	Endothelin 2.	0.893
ENSNMLP00000003788	ENSNMLP00000034330	Endothelin receptor Ba.	annotation not available	0.973
ENSNMLP00000010590	ENSNMLP00000003788	annotation not available	Endothelin receptor Ba.	0.822
ENSNMLP00000010590	ENSNMLP00000022738	annotation not available	annotation not available	0.989
ENSNMLP00000010590	ENSNMLP00000025665	annotation not available	Endothelin 2.	0.903
ENSNMLP00000010590	ENSNMLP00000031828	annotation not available	Endothelin receptor type Bb.	0.822
ENSNMLP00000010590	ENSNMLP00000034330	annotation not available	annotation not available	0.975
ENSNMLP00000022738	ENSNMLP00000003788	annotation not available	Endothelin receptor Ba.	0.987
ENSNMLP00000022738	ENSNMLP00000010590	annotation not available	annotation not available	0.989
ENSNMLP00000022738	ENSNMLP00000025665	annotation not available	Endothelin 2.	0.877
ENSNMLP00000022738	ENSNMLP00000031828	annotation not available	Endothelin receptor type Bb.	0.987
ENSNMLP00000022738	ENSNMLP00000034330	annotation not available	annotation not available	0.901
ENSNMLP00000022738	ENSNMLP00000036376	annotation not available	5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled.	0.464
ENSNMLP00000025665	ENSNMLP00000003788	Endothelin 2.	Endothelin receptor Ba.	0.893
ENSNMLP00000025665	ENSNMLP00000010590	Endothelin 2.	annotation not available	0.903
ENSNMLP00000025665	ENSNMLP00000022738	Endothelin 2.	annotation not available	0.877
ENSNMLP00000025665	ENSNMLP00000031828	Endothelin 2.	Endothelin receptor type Bb.	0.893
ENSNMLP00000025665	ENSNMLP00000034330	Endothelin 2.	annotation not available	0.866