(19 nodes) RNA polymerase II general transcription initiation factor activity network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000003179	annotation not available (170 aa)
	ENSNMLP00000043771	General transcription factor IIE, polypeptide 1, alpha. (231 aa)
	ENSNMLP00000042510	TATA box binding protein. (301 aa)
	ENSNMLP00000029551	annotation not available (1085 aa)
	ENSNMLP00000031135	General transcription factor IIA, 1. (362 aa)
	ENSNMLP00000031971	General transcription factor IIE, polypeptide 2, beta. (276 aa)
	ENSNMLP00000032391	General transcription factor IIH, polypeptide 4. (469 aa)
	ENSNMLP00000033281	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (175 aa)
	ENSNMLP00000038060	annotation not available (474 aa)
	ENSNMLP00000022379	annotation not available (165 aa)
	ENSNMLP00000017292	General transcription factor IIA, 2. (109 aa)
	ENSNMLP00000016276	General transcription factor IIF, polypeptide 1. (481 aa)
	ENSNMLP00000013365	Small nuclear RNA activating complex, polypeptide 5. (114 aa)
	ENSNMLP00000012095	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
	ENSNMLP00000005217	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (631 aa)
	ENSNMLP00000003403	Down-regulator of transcription 1. (167 aa)
	ENSNMLP00000027278	General transcription factor IIB. (318 aa)
	ENSNMLP00000028832	General transcription factor IIH, polypeptide 3. (307 aa)
	ENSNMLP00000029684	DR1-associated protein 1 (negative cofactor 2 alpha). (209 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003179	ENSNMLP00000003403	annotation not available	Down-regulator of transcription 1.	0.865
ENSNMLP00000003179	ENSNMLP00000005217	annotation not available	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.972
ENSNMLP00000003179	ENSNMLP00000012095	annotation not available	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.971
ENSNMLP00000003179	ENSNMLP00000013365	annotation not available	Small nuclear RNA activating complex, polypeptide 5.	0.766
ENSNMLP00000003179	ENSNMLP00000016276	annotation not available	General transcription factor IIF, polypeptide 1.	0.963
ENSNMLP00000003179	ENSNMLP00000017292	annotation not available	General transcription factor IIA, 2.	0.968
ENSNMLP00000003179	ENSNMLP00000022379	annotation not available	annotation not available	0.758
ENSNMLP00000003179	ENSNMLP00000027278	annotation not available	General transcription factor IIB.	0.974
ENSNMLP00000003179	ENSNMLP00000028832	annotation not available	General transcription factor IIH, polypeptide 3.	0.955
ENSNMLP00000003179	ENSNMLP00000029551	annotation not available	annotation not available	0.856
ENSNMLP00000003179	ENSNMLP00000029684	annotation not available	DR1-associated protein 1 (negative cofactor 2 alpha).	0.758
ENSNMLP00000003179	ENSNMLP00000031135	annotation not available	General transcription factor IIA, 1.	0.881
ENSNMLP00000003179	ENSNMLP00000031971	annotation not available	General transcription factor IIE, polypeptide 2, beta.	0.962
ENSNMLP00000003179	ENSNMLP00000032391	annotation not available	General transcription factor IIH, polypeptide 4.	0.952
ENSNMLP00000003179	ENSNMLP00000033281	annotation not available	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.971
ENSNMLP00000003179	ENSNMLP00000043771	annotation not available	General transcription factor IIE, polypeptide 1, alpha.	0.968
ENSNMLP00000003403	ENSNMLP00000003179	Down-regulator of transcription 1.	annotation not available	0.865
ENSNMLP00000003403	ENSNMLP00000005217	Down-regulator of transcription 1.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.855
ENSNMLP00000003403	ENSNMLP00000022379	Down-regulator of transcription 1.	annotation not available	0.991
ENSNMLP00000003403	ENSNMLP00000027278	Down-regulator of transcription 1.	General transcription factor IIB.	0.653