(11 nodes) Protein autoprocessing network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000038410	SprT-like N-terminal domain. (501 aa)
	ENSNMLP00000003161	annotation not available (429 aa)
	ENSNMLP00000008779	Phosphatidylserine decarboxylase. (395 aa)
	ENSNMLP00000014291	Desert hedgehog signaling molecule. (446 aa)
	ENSNMLP00000020080	OMA1 zinc metallopeptidase. (519 aa)
	ENSNMLP00000020830	Proprotein convertase subtilisin/kexin type 9. (666 aa)
	ENSNMLP00000021363	Frataxin. (137 aa)
	ENSNMLP00000022926	Caspase 6, apoptosis-related cysteine peptidase a. (330 aa)
	ENSNMLP00000035020	Proprotein convertase subtilisin/kexin type 2. (631 aa)
	ENSNMLP00000035374	annotation not available (83 aa)
	ENSNMLP00000041553	Sonic hedgehog signaling molecule a. (407 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003161	ENSNMLP00000014291	annotation not available	Desert hedgehog signaling molecule.	0.843
ENSNMLP00000003161	ENSNMLP00000041553	annotation not available	Sonic hedgehog signaling molecule a.	0.847
ENSNMLP00000008779	ENSNMLP00000020830	Phosphatidylserine decarboxylase.	Proprotein convertase subtilisin/kexin type 9.	0.467
ENSNMLP00000014291	ENSNMLP00000003161	Desert hedgehog signaling molecule.	annotation not available	0.843
ENSNMLP00000014291	ENSNMLP00000041553	Desert hedgehog signaling molecule.	Sonic hedgehog signaling molecule a.	0.834
ENSNMLP00000020830	ENSNMLP00000008779	Proprotein convertase subtilisin/kexin type 9.	Phosphatidylserine decarboxylase.	0.467
ENSNMLP00000041553	ENSNMLP00000003161	Sonic hedgehog signaling molecule a.	annotation not available	0.847
ENSNMLP00000041553	ENSNMLP00000014291	Sonic hedgehog signaling molecule a.	Desert hedgehog signaling molecule.	0.834