(11 nodes) Rac protein signal transduction network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000004096	annotation not available (147 aa)
	ENSNMLP00000012132	Ras homolog family member Gb. (191 aa)
	ENSNMLP00000012442	WASP family member 1. (530 aa)
	ENSNMLP00000012864	Nischarin. (924 aa)
	ENSNMLP00000013264	annotation not available (463 aa)
	ENSNMLP00000016521	Ras homolog gene family, member Gd. (191 aa)
	ENSNMLP00000033047	Abl-interactor 2b. (452 aa)
	ENSNMLP00000014882	WASP family member 2. (483 aa)
	ENSNMLP00000000243	Si:ch211-79l17.1. (1104 aa)
	ENSNMLP00000003373	annotation not available (101 aa)
	ENSNMLP00000003376	annotation not available (187 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000243	ENSNMLP00000003373	Si:ch211-79l17.1.	annotation not available	0.565
ENSNMLP00000000243	ENSNMLP00000003376	Si:ch211-79l17.1.	annotation not available	0.565
ENSNMLP00000000243	ENSNMLP00000012132	Si:ch211-79l17.1.	Ras homolog family member Gb.	0.665
ENSNMLP00000000243	ENSNMLP00000016521	Si:ch211-79l17.1.	Ras homolog gene family, member Gd.	0.665
ENSNMLP00000000243	ENSNMLP00000033047	Si:ch211-79l17.1.	Abl-interactor 2b.	0.565
ENSNMLP00000003373	ENSNMLP00000000243	annotation not available	Si:ch211-79l17.1.	0.565
ENSNMLP00000003373	ENSNMLP00000003376	annotation not available	annotation not available	0.899
ENSNMLP00000003373	ENSNMLP00000012132	annotation not available	Ras homolog family member Gb.	0.582
ENSNMLP00000003373	ENSNMLP00000012442	annotation not available	WASP family member 1.	0.889
ENSNMLP00000003373	ENSNMLP00000014882	annotation not available	WASP family member 2.	0.889
ENSNMLP00000003373	ENSNMLP00000016521	annotation not available	Ras homolog gene family, member Gd.	0.582
ENSNMLP00000003376	ENSNMLP00000000243	annotation not available	Si:ch211-79l17.1.	0.565
ENSNMLP00000003376	ENSNMLP00000003373	annotation not available	annotation not available	0.899
ENSNMLP00000003376	ENSNMLP00000012132	annotation not available	Ras homolog family member Gb.	0.582
ENSNMLP00000003376	ENSNMLP00000012442	annotation not available	WASP family member 1.	0.889
ENSNMLP00000003376	ENSNMLP00000014882	annotation not available	WASP family member 2.	0.889
ENSNMLP00000003376	ENSNMLP00000016521	annotation not available	Ras homolog gene family, member Gd.	0.582
ENSNMLP00000004096	ENSNMLP00000012132	annotation not available	Ras homolog family member Gb.	0.419
ENSNMLP00000004096	ENSNMLP00000016521	annotation not available	Ras homolog gene family, member Gd.	0.419
ENSNMLP00000012132	ENSNMLP00000000243	Ras homolog family member Gb.	Si:ch211-79l17.1.	0.665