(20 nodes) Lamellipodium assembly network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000005615	annotation not available (387 aa)
	WHAMM	WASP homolog associated with actin, golgi membranes and microtubules. (775 aa)
	ENSNMLP00000032636	annotation not available (118 aa)
	ENSNMLP00000032635	NCK adaptor protein 2a. (177 aa)
	ENSNMLP00000031556	Actin binding LIM protein 1a. (656 aa)
	ENSNMLP00000027019	Zgc:66426. (191 aa)
	ENSNMLP00000023057	Zgc:109889. (322 aa)
	ENSNMLP00000022563	Vinculin b. (1074 aa)
	ENSNMLP00000021290	Si:dkey-27b3.2. (290 aa)
	ENSNMLP00000020554	annotation not available (355 aa)
	ENSNMLP00000019805	Cytoplasmic FMR1 interacting protein 1. (1269 aa)
	ENSNMLP00000019076	annotation not available (429 aa)
	ENSNMLP00000018559	Actin binding LIM protein family, member 3. (665 aa)
	ENSNMLP00000018368	WASP family member 3b. (472 aa)
	ENSNMLP00000017423	annotation not available (357 aa)
	ENSNMLP00000013453	annotation not available (450 aa)
	ENSNMLP00000011611	Actin binding LIM protein family, member 2. (505 aa)
	ENSNMLP00000010251	NCK adaptor protein 1b. (389 aa)
	ENSNMLP00000009361	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6. (736 aa)
	ENSNMLP00000001394	annotation not available (293 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000005615	ENSNMLP00000011611	annotation not available	Actin binding LIM protein family, member 2.	0.824
ENSNMLP00000005615	ENSNMLP00000017423	annotation not available	annotation not available	0.719
ENSNMLP00000005615	ENSNMLP00000020554	annotation not available	annotation not available	0.628
ENSNMLP00000005615	ENSNMLP00000031556	annotation not available	Actin binding LIM protein 1a.	0.641
ENSNMLP00000009361	ENSNMLP00000010251	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.	NCK adaptor protein 1b.	0.852
ENSNMLP00000009361	ENSNMLP00000032635	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.	NCK adaptor protein 2a.	0.852
ENSNMLP00000009361	ENSNMLP00000032636	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.	annotation not available	0.831
ENSNMLP00000010251	ENSNMLP00000009361	NCK adaptor protein 1b.	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.	0.852
ENSNMLP00000010251	ENSNMLP00000013453	NCK adaptor protein 1b.	annotation not available	0.673
ENSNMLP00000010251	ENSNMLP00000018368	NCK adaptor protein 1b.	WASP family member 3b.	0.673
ENSNMLP00000010251	ENSNMLP00000019805	NCK adaptor protein 1b.	Cytoplasmic FMR1 interacting protein 1.	0.776
ENSNMLP00000010251	ENSNMLP00000023057	NCK adaptor protein 1b.	Zgc:109889.	0.673
ENSNMLP00000011611	ENSNMLP00000005615	Actin binding LIM protein family, member 2.	annotation not available	0.824
ENSNMLP00000011611	ENSNMLP00000017423	Actin binding LIM protein family, member 2.	annotation not available	0.837
ENSNMLP00000011611	ENSNMLP00000018559	Actin binding LIM protein family, member 2.	Actin binding LIM protein family, member 3.	0.821
ENSNMLP00000011611	ENSNMLP00000020554	Actin binding LIM protein family, member 2.	annotation not available	0.837
ENSNMLP00000011611	ENSNMLP00000031556	Actin binding LIM protein family, member 2.	Actin binding LIM protein 1a.	0.840
ENSNMLP00000013453	ENSNMLP00000010251	annotation not available	NCK adaptor protein 1b.	0.673
ENSNMLP00000013453	ENSNMLP00000018368	annotation not available	WASP family member 3b.	0.839
ENSNMLP00000013453	ENSNMLP00000019805	annotation not available	Cytoplasmic FMR1 interacting protein 1.	0.965