(37 nodes) mRNA 3-end processing network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CSTF2T	Cleavage stimulation factor subunit 2 tau variant. (459 aa)
	ENSNMLP00000020932	Regulation of nuclear pre-mRNA domain containing 2b. (1293 aa)
	ENSNMLP00000020973	Regulation of nuclear pre-mRNA domain containing 1A. (305 aa)
	ENSNMLP00000021555	Cleavage and polyadenylation factor I subunit 1. (440 aa)
	ENSNMLP00000000481	annotation not available (310 aa)
	ENSNMLP00000003474	annotation not available (247 aa)
	ENSNMLP00000004368	SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
	ENSNMLP00000004371	annotation not available (175 aa)
	ENSNMLP00000005080	Polymerase (RNA) II (DNA directed) polypeptide D. (141 aa)
	ENSNMLP00000005229	annotation not available (72 aa)
	ENSNMLP00000005235	annotation not available (128 aa)
	ENSNMLP00000005246	annotation not available (711 aa)
	ENSNMLP00000018091	LSM11, U7 small nuclear RNA associated. (301 aa)
	ENSNMLP00000017023	annotation not available (642 aa)
	ENSNMLP00000006849	Cleavage stimulation factor, 3' pre-RNA, subunit 3. (715 aa)
	ENSNMLP00000007141	Stem-loop binding protein. (202 aa)
	ENSNMLP00000007370	Amyloid beta (A4) precursor-like protein 1. (595 aa)
	ENSNMLP00000009188	annotation not available (310 aa)
	ENSNMLP00000009202	annotation not available (263 aa)
	ENSNMLP00000035299	Nudix hydrolase 21. (236 aa)
	ENSNMLP00000037665	Metallo-beta-lactamase domain containing 1. (233 aa)
	ENSNMLP00000038013	Regulation of nuclear pre-mRNA domain containing 1B. (330 aa)
	ENSNMLP00000038543	annotation not available (158 aa)
	ENSNMLP00000014011	Cleavage and polyadenylation specific factor 4. (254 aa)
	ENSNMLP00000016153	Transmembrane protein 240a. (175 aa)
	ENSNMLP00000022028	Organic solute carrier partner 1a. (122 aa)
	ENSNMLP00000000296	Cleavage and polyadenylation specific factor 2. (796 aa)
	ENSNMLP00000029562	annotation not available (207 aa)
	ENSNMLP00000030979	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (542 aa)
	ENSNMLP00000031169	Mitochondrial poly(A) polymerase. (565 aa)
	MTPAP	Mitochondrial poly(A) polymerase. (314 aa)
	ENSNMLP00000031171	annotation not available (82 aa)
	ENSNMLP00000033482	annotation not available (1156 aa)
	ENSNMLP00000033498	annotation not available (310 aa)
	ENSNMLP00000034340	Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
	ENSNMLP00000018381	Terminal nucleotidyltransferase 2. (443 aa)
	PNPT1	Polyribonucleotide nucleotidyltransferase 1. (766 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSTF2T	ENSNMLP00000000296	ENSNMLP00000019031	ENSNMLP00000000296	Cleavage stimulation factor subunit 2 tau variant.	Cleavage and polyadenylation specific factor 2.	0.994
CSTF2T	ENSNMLP00000003474	ENSNMLP00000019031	ENSNMLP00000003474	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.954
CSTF2T	ENSNMLP00000004368	ENSNMLP00000019031	ENSNMLP00000004368	Cleavage stimulation factor subunit 2 tau variant.	SSU72 homolog, RNA polymerase II CTD phosphatase.	0.982
CSTF2T	ENSNMLP00000004371	ENSNMLP00000019031	ENSNMLP00000004371	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.982
CSTF2T	ENSNMLP00000005080	ENSNMLP00000019031	ENSNMLP00000005080	Cleavage stimulation factor subunit 2 tau variant.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.696
CSTF2T	ENSNMLP00000005229	ENSNMLP00000019031	ENSNMLP00000005229	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.446
CSTF2T	ENSNMLP00000005235	ENSNMLP00000019031	ENSNMLP00000005235	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.446
CSTF2T	ENSNMLP00000005246	ENSNMLP00000019031	ENSNMLP00000005246	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.446
CSTF2T	ENSNMLP00000006849	ENSNMLP00000019031	ENSNMLP00000006849	Cleavage stimulation factor subunit 2 tau variant.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.999
CSTF2T	ENSNMLP00000014011	ENSNMLP00000019031	ENSNMLP00000014011	Cleavage stimulation factor subunit 2 tau variant.	Cleavage and polyadenylation specific factor 4.	0.995
CSTF2T	ENSNMLP00000016153	ENSNMLP00000019031	ENSNMLP00000016153	Cleavage stimulation factor subunit 2 tau variant.	Transmembrane protein 240a.	0.982
CSTF2T	ENSNMLP00000017023	ENSNMLP00000019031	ENSNMLP00000017023	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.995
CSTF2T	ENSNMLP00000018091	ENSNMLP00000019031	ENSNMLP00000018091	Cleavage stimulation factor subunit 2 tau variant.	LSM11, U7 small nuclear RNA associated.	0.562
CSTF2T	ENSNMLP00000018381	ENSNMLP00000019031	ENSNMLP00000018381	Cleavage stimulation factor subunit 2 tau variant.	Terminal nucleotidyltransferase 2.	0.813
CSTF2T	ENSNMLP00000020932	ENSNMLP00000019031	ENSNMLP00000020932	Cleavage stimulation factor subunit 2 tau variant.	Regulation of nuclear pre-mRNA domain containing 2b.	0.446
CSTF2T	ENSNMLP00000020973	ENSNMLP00000019031	ENSNMLP00000020973	Cleavage stimulation factor subunit 2 tau variant.	Regulation of nuclear pre-mRNA domain containing 1A.	0.701
CSTF2T	ENSNMLP00000021555	ENSNMLP00000019031	ENSNMLP00000021555	Cleavage stimulation factor subunit 2 tau variant.	Cleavage and polyadenylation factor I subunit 1.	0.993
CSTF2T	ENSNMLP00000022028	ENSNMLP00000019031	ENSNMLP00000022028	Cleavage stimulation factor subunit 2 tau variant.	Organic solute carrier partner 1a.	0.962
CSTF2T	ENSNMLP00000029562	ENSNMLP00000019031	ENSNMLP00000029562	Cleavage stimulation factor subunit 2 tau variant.	annotation not available	0.994
CSTF2T	ENSNMLP00000030979	ENSNMLP00000019031	ENSNMLP00000030979	Cleavage stimulation factor subunit 2 tau variant.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.458