(14 nodes) Monoubiquitinated histone H2A deubiquitination network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000019856	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (154 aa)
	ENSNMLP00000020024	Myb-like, SWIRM and MPN domains 1. (826 aa)
	ENSNMLP00000020755	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase). (744 aa)
	ENSNMLP00000021513	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (590 aa)
	ENSNMLP00000033281	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (175 aa)
	ENSNMLP00000037813	SAGA complex associated factor 29. (276 aa)
	ENSNMLP00000039164	SPT3 homolog, SAGA and STAGA complex component. (348 aa)
	ENSNMLP00000039576	Splicing factor 3b, subunit 5. (119 aa)
	ENSNMLP00000040077	Ataxin 7-like 2a. (708 aa)
	ENSNMLP00000040697	Ataxin 7. (909 aa)
	ENSNMLP00000044022	SPT7 like, STAGA complex gamma subunit. (412 aa)
	ENSNMLP00000004354	annotation not available (286 aa)
	ENSNMLP00000004377	annotation not available (187 aa)
	ENSNMLP00000005217	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (631 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000004354	ENSNMLP00000005217	annotation not available	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.978
ENSNMLP00000004354	ENSNMLP00000019856	annotation not available	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.979
ENSNMLP00000004354	ENSNMLP00000021513	annotation not available	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.978
ENSNMLP00000004354	ENSNMLP00000033281	annotation not available	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.978
ENSNMLP00000004354	ENSNMLP00000037813	annotation not available	SAGA complex associated factor 29.	0.959
ENSNMLP00000004354	ENSNMLP00000039164	annotation not available	SPT3 homolog, SAGA and STAGA complex component.	0.974
ENSNMLP00000004354	ENSNMLP00000039576	annotation not available	Splicing factor 3b, subunit 5.	0.729
ENSNMLP00000004354	ENSNMLP00000044022	annotation not available	SPT7 like, STAGA complex gamma subunit.	0.832
ENSNMLP00000004377	ENSNMLP00000005217	annotation not available	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.978
ENSNMLP00000004377	ENSNMLP00000019856	annotation not available	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.979
ENSNMLP00000004377	ENSNMLP00000021513	annotation not available	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.978
ENSNMLP00000004377	ENSNMLP00000033281	annotation not available	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.978
ENSNMLP00000004377	ENSNMLP00000037813	annotation not available	SAGA complex associated factor 29.	0.959
ENSNMLP00000004377	ENSNMLP00000039164	annotation not available	SPT3 homolog, SAGA and STAGA complex component.	0.974
ENSNMLP00000004377	ENSNMLP00000039576	annotation not available	Splicing factor 3b, subunit 5.	0.729
ENSNMLP00000004377	ENSNMLP00000044022	annotation not available	SPT7 like, STAGA complex gamma subunit.	0.832
ENSNMLP00000005217	ENSNMLP00000004354	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	annotation not available	0.978
ENSNMLP00000005217	ENSNMLP00000004377	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	annotation not available	0.978
ENSNMLP00000005217	ENSNMLP00000019856	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSNMLP00000005217	ENSNMLP00000021513	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.999