(10 nodes) Nuclear pore nuclear basket network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000002906	annotation not available (251 aa)
	ENSNMLP00000002912	annotation not available (206 aa)
	ENSNMLP00000002923	annotation not available (814 aa)
	ENSNMLP00000017187	Mitotic arrest deficient 1 like 1. (680 aa)
	ENSNMLP00000016038	Centrin 3. (169 aa)
	ENSNMLP00000011552	MAD2 mitotic arrest deficient-like 1 (yeast). (238 aa)
	ENSNMLP00000001120	Nucleoporin 35. (295 aa)
	ENSNMLP00000002437	annotation not available (244 aa)
	ENSNMLP00000002900	annotation not available (94 aa)
	ENSNMLP00000033131	Nucleoporin 98. (1684 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001120	ENSNMLP00000002437	Nucleoporin 35.	annotation not available	0.996
ENSNMLP00000001120	ENSNMLP00000002900	Nucleoporin 35.	annotation not available	0.996
ENSNMLP00000001120	ENSNMLP00000002906	Nucleoporin 35.	annotation not available	0.996
ENSNMLP00000001120	ENSNMLP00000002912	Nucleoporin 35.	annotation not available	0.996
ENSNMLP00000001120	ENSNMLP00000002923	Nucleoporin 35.	annotation not available	0.996
ENSNMLP00000001120	ENSNMLP00000011552	Nucleoporin 35.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.834
ENSNMLP00000001120	ENSNMLP00000017187	Nucleoporin 35.	Mitotic arrest deficient 1 like 1.	0.782
ENSNMLP00000001120	ENSNMLP00000033131	Nucleoporin 35.	Nucleoporin 98.	0.992
ENSNMLP00000002437	ENSNMLP00000001120	annotation not available	Nucleoporin 35.	0.996
ENSNMLP00000002437	ENSNMLP00000002900	annotation not available	annotation not available	0.894
ENSNMLP00000002437	ENSNMLP00000002906	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000002912	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000002923	annotation not available	annotation not available	0.989
ENSNMLP00000002437	ENSNMLP00000011552	annotation not available	MAD2 mitotic arrest deficient-like 1 (yeast).	0.983
ENSNMLP00000002437	ENSNMLP00000016038	annotation not available	Centrin 3.	0.889
ENSNMLP00000002437	ENSNMLP00000017187	annotation not available	Mitotic arrest deficient 1 like 1.	0.928
ENSNMLP00000002437	ENSNMLP00000033131	annotation not available	Nucleoporin 98.	0.996
ENSNMLP00000002900	ENSNMLP00000001120	annotation not available	Nucleoporin 35.	0.996
ENSNMLP00000002900	ENSNMLP00000002437	annotation not available	annotation not available	0.894
ENSNMLP00000002900	ENSNMLP00000002906	annotation not available	annotation not available	0.900