(37 nodes) Intercellular bridge network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000004068	ELL associated factor 1. (238 aa)
	ENSNMLP00000004574	Unc-119 homolog b (C. elegans). (205 aa)
	ENSNMLP00000009060	annotation not available (209 aa)
	ENSNMLP00000009293	annotation not available (1810 aa)
	ENSNMLP00000009995	annotation not available (131 aa)
	ENSNMLP00000010974	Matrix metallopeptidase 15a. (367 aa)
	ENSNMLP00000011760	Pleckstrin homology-like domain, family B, member 2a. (968 aa)
	ENSNMLP00000012476	WAPL cohesin release factor a. (1151 aa)
	ENSNMLP00000012887	annotation not available (199 aa)
	ENSNMLP00000012893	annotation not available (879 aa)
	ENSNMLP00000013533	Kinesin family member 20A. (874 aa)
	ENSNMLP00000014316	annotation not available (207 aa)
	ENSNMLP00000015923	Regulatory factor X-associated ankyrin-containing protein. (194 aa)
	ENSNMLP00000017085	Si:ch211-173a9.6. (453 aa)
	ENSNMLP00000017316	Small nuclear ribonucleoprotein 25. (232 aa)
	ENSNMLP00000021351	Tripartite motif containing 45. (583 aa)
	ENSNMLP00000021436	Cell division cycle 6 homolog (S. cerevisiae). (573 aa)
	ENSNMLP00000021958	annotation not available (445 aa)
	ENSNMLP00000022222	Kelch domain containing 8A. (354 aa)
	ENSNMLP00000022244	Dynactin 1b. (1212 aa)
	ENSNMLP00000026473	annotation not available (513 aa)
	ENSNMLP00000026932	Potassium voltage-gated channel modifier subfamily V member 1. (422 aa)
	ENSNMLP00000027218	Cell division cycle 7 homolog (S. cerevisiae). (536 aa)
	ENSNMLP00000027565	annotation not available (281 aa)
	ENSNMLP00000029953	Poly (ADP-ribose) polymerase family, member 3. (459 aa)
	ENSNMLP00000033940	RNA binding motif protein 18. (202 aa)
	ENSNMLP00000034014	Si:dkey-16l2.16. (207 aa)
	ENSNMLP00000034863	WAPL cohesin release factor b. (1019 aa)
	ENSNMLP00000035614	CD164 molecule, sialomucin. (190 aa)
	ENSNMLP00000035842	KRR1 small subunit processome component homolog. (380 aa)
	ENSNMLP00000036782	Angio-associated, migratory cell protein. (415 aa)
	ENSNMLP00000037162	annotation not available (298 aa)
	ENSNMLP00000037906	Estrogen-related receptor alpha. (429 aa)
	ENSNMLP00000042220	Kelch domain containing 8B. (302 aa)
	ENSNMLP00000042454	Si:ch211-286o17.1. (297 aa)
	ENSNMLP00000043735	NudC domain containing 2. (173 aa)
	ENSNMLP00000043816	RAB35, member RAS oncogene family b. (202 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000009293	ENSNMLP00000009995	annotation not available	annotation not available	0.576
ENSNMLP00000009293	ENSNMLP00000021958	annotation not available	annotation not available	0.760
ENSNMLP00000009293	ENSNMLP00000022244	annotation not available	Dynactin 1b.	0.576
ENSNMLP00000009293	ENSNMLP00000026473	annotation not available	annotation not available	0.760
ENSNMLP00000009995	ENSNMLP00000009293	annotation not available	annotation not available	0.576
ENSNMLP00000009995	ENSNMLP00000012887	annotation not available	annotation not available	0.704
ENSNMLP00000009995	ENSNMLP00000012893	annotation not available	annotation not available	0.704
ENSNMLP00000009995	ENSNMLP00000013533	annotation not available	Kinesin family member 20A.	0.576
ENSNMLP00000009995	ENSNMLP00000037162	annotation not available	annotation not available	0.704
ENSNMLP00000012887	ENSNMLP00000009995	annotation not available	annotation not available	0.704
ENSNMLP00000012887	ENSNMLP00000012893	annotation not available	annotation not available	0.887
ENSNMLP00000012887	ENSNMLP00000021958	annotation not available	annotation not available	0.412
ENSNMLP00000012887	ENSNMLP00000022244	annotation not available	Dynactin 1b.	0.704
ENSNMLP00000012887	ENSNMLP00000026473	annotation not available	annotation not available	0.412
ENSNMLP00000012893	ENSNMLP00000009995	annotation not available	annotation not available	0.704
ENSNMLP00000012893	ENSNMLP00000012887	annotation not available	annotation not available	0.887
ENSNMLP00000012893	ENSNMLP00000021958	annotation not available	annotation not available	0.412
ENSNMLP00000012893	ENSNMLP00000022244	annotation not available	Dynactin 1b.	0.704
ENSNMLP00000012893	ENSNMLP00000026473	annotation not available	annotation not available	0.412
ENSNMLP00000012893	ENSNMLP00000027565	annotation not available	annotation not available	0.425