(10 nodes) Set1C/COMPASS complex network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000009820	annotation not available (141 aa)
	ENSNMLP00000044609	Retinoblastoma binding protein 5. (537 aa)
	ENSNMLP00000036354	annotation not available (602 aa)
	ENSNMLP00000034817	Host cell factor C2. (731 aa)
	ENSNMLP00000029923	Ash2 like, histone lysine methyltransferase complex subunit. (513 aa)
	ENSNMLP00000021444	Dpy-30 histone methyltransferase complex regulatory subunit. (101 aa)
	ENSNMLP00000019439	annotation not available (115 aa)
	ENSNMLP00000018188	annotation not available (562 aa)
	ENSNMLP00000012801	WD repeat domain 5. (333 aa)
	ENSNMLP00000011979	WD repeat domain 82. (595 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000009820	ENSNMLP00000011979	annotation not available	WD repeat domain 82.	0.803
ENSNMLP00000009820	ENSNMLP00000012801	annotation not available	WD repeat domain 5.	0.881
ENSNMLP00000009820	ENSNMLP00000018188	annotation not available	annotation not available	0.862
ENSNMLP00000009820	ENSNMLP00000019439	annotation not available	annotation not available	0.881
ENSNMLP00000009820	ENSNMLP00000021444	annotation not available	Dpy-30 histone methyltransferase complex regulatory subunit.	0.910
ENSNMLP00000009820	ENSNMLP00000036354	annotation not available	annotation not available	0.803
ENSNMLP00000009820	ENSNMLP00000044609	annotation not available	Retinoblastoma binding protein 5.	0.850
ENSNMLP00000011979	ENSNMLP00000009820	WD repeat domain 82.	annotation not available	0.803
ENSNMLP00000011979	ENSNMLP00000012801	WD repeat domain 82.	WD repeat domain 5.	0.951
ENSNMLP00000011979	ENSNMLP00000018188	WD repeat domain 82.	annotation not available	0.989
ENSNMLP00000011979	ENSNMLP00000019439	WD repeat domain 82.	annotation not available	0.990
ENSNMLP00000011979	ENSNMLP00000021444	WD repeat domain 82.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.967
ENSNMLP00000011979	ENSNMLP00000029923	WD repeat domain 82.	Ash2 like, histone lysine methyltransferase complex subunit.	0.988
ENSNMLP00000011979	ENSNMLP00000034817	WD repeat domain 82.	Host cell factor C2.	0.913
ENSNMLP00000011979	ENSNMLP00000044609	WD repeat domain 82.	Retinoblastoma binding protein 5.	0.983
ENSNMLP00000012801	ENSNMLP00000009820	WD repeat domain 5.	annotation not available	0.881
ENSNMLP00000012801	ENSNMLP00000011979	WD repeat domain 5.	WD repeat domain 82.	0.951
ENSNMLP00000012801	ENSNMLP00000018188	WD repeat domain 5.	annotation not available	0.981
ENSNMLP00000012801	ENSNMLP00000019439	WD repeat domain 5.	annotation not available	0.985
ENSNMLP00000012801	ENSNMLP00000021444	WD repeat domain 5.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.992