(40 nodes) Synaptic vesicle endocytosis network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000018310	annotation not available (369 aa)
	ENSNMLP00000017287	Synuclein, beta. (117 aa)
	ENSNMLP00000014069	DENN/MADD domain containing 1A. (933 aa)
	ENSNMLP00000013419	Nitric oxide synthase trafficking. (582 aa)
	ENSNMLP00000013274	annotation not available (252 aa)
	ENSNMLP00000012822	annotation not available (131 aa)
	ENSNMLP00000012797	annotation not available (157 aa)
	ENSNMLP00000012464	Synaptosome associated protein 91b. (238 aa)
	ENSNMLP00000011617	Dynamin 1a. (837 aa)
	ENSNMLP00000010975	Phosphatidylinositol binding clathrin assembly protein b. (681 aa)
	ENSNMLP00000010450	Synaptotagmin Ib. (334 aa)
	ENSNMLP00000009191	annotation not available (864 aa)
	ENSNMLP00000005864	annotation not available (152 aa)
	ENSNMLP00000002798	annotation not available (64 aa)
	ENSNMLP00000001637	SH3-domain GRB2-like 3a. (349 aa)
	ENSNMLP00000000895	annotation not available (868 aa)
	ENSNMLP00000000279	SH3-domain GRB2-like 1b. (358 aa)
	ENSNMLP00000044231	Synaptotagmin Ia. (407 aa)
	ENSNMLP00000042745	FCH and mu domain containing endocytic adaptor 2. (731 aa)
	ENSNMLP00000042735	annotation not available (697 aa)
	ENSNMLP00000042340	Neuroligin 1. (619 aa)
	ENSNMLP00000040867	Synaptotagmin IIa. (284 aa)
	ENSNMLP00000037726	Neuroligin 2a. (589 aa)
	ENSNMLP00000036098	Neuroligin 2b. (865 aa)
	ENSNMLP00000031703	Synaptotagmin Vb. (439 aa)
	ENSNMLP00000029919	annotation not available (820 aa)
	ENSNMLP00000029427	annotation not available (187 aa)
	ENSNMLP00000029426	annotation not available (80 aa)
	ENSNMLP00000029270	Neuroligin 3b. (815 aa)
	ENSNMLP00000026908	annotation not available (758 aa)
	ENSNMLP00000026712	Synuclein, gamma b (breast cancer-specific protein 1). (115 aa)
	ENSNMLP00000024246	Neuroligin 4 X-linked a. (890 aa)
	ENSNMLP00000024132	Dynamin 2a. (852 aa)
	ENSNMLP00000023600	Si:ch211-200p22.4. (315 aa)
	ENSNMLP00000023033	SH3 domain containing GRB2 like 2a, endophilin A1. (346 aa)
	ENSNMLP00000021499	Si:ch211-200p22.4. (581 aa)
	ENSNMLP00000020030	SH3-domain GRB2-like 1a. (344 aa)
	ENSNMLP00000019391	Neuroligin 3a. (818 aa)
	ENSNMLP00000018308	annotation not available (57 aa)
	ENSNMLP00000000027	annotation not available (685 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000027	ENSNMLP00000010450	annotation not available	Synaptotagmin Ib.	0.490
ENSNMLP00000000027	ENSNMLP00000013274	annotation not available	annotation not available	0.490
ENSNMLP00000000027	ENSNMLP00000031703	annotation not available	Synaptotagmin Vb.	0.490
ENSNMLP00000000027	ENSNMLP00000040867	annotation not available	Synaptotagmin IIa.	0.490
ENSNMLP00000000027	ENSNMLP00000042735	annotation not available	annotation not available	0.993
ENSNMLP00000000027	ENSNMLP00000042745	annotation not available	FCH and mu domain containing endocytic adaptor 2.	0.574
ENSNMLP00000000027	ENSNMLP00000044231	annotation not available	Synaptotagmin Ia.	0.490
ENSNMLP00000000279	ENSNMLP00000009191	SH3-domain GRB2-like 1b.	annotation not available	0.701
ENSNMLP00000000279	ENSNMLP00000010450	SH3-domain GRB2-like 1b.	Synaptotagmin Ib.	0.410
ENSNMLP00000000279	ENSNMLP00000011617	SH3-domain GRB2-like 1b.	Dynamin 1a.	0.701
ENSNMLP00000000279	ENSNMLP00000013274	SH3-domain GRB2-like 1b.	annotation not available	0.413
ENSNMLP00000000279	ENSNMLP00000018308	SH3-domain GRB2-like 1b.	annotation not available	0.701
ENSNMLP00000000279	ENSNMLP00000018310	SH3-domain GRB2-like 1b.	annotation not available	0.701
ENSNMLP00000000279	ENSNMLP00000020030	SH3-domain GRB2-like 1b.	SH3-domain GRB2-like 1a.	0.798
ENSNMLP00000000279	ENSNMLP00000023033	SH3-domain GRB2-like 1b.	SH3 domain containing GRB2 like 2a, endophilin A1.	0.798
ENSNMLP00000000279	ENSNMLP00000024132	SH3-domain GRB2-like 1b.	Dynamin 2a.	0.701
ENSNMLP00000000279	ENSNMLP00000029426	SH3-domain GRB2-like 1b.	annotation not available	0.570
ENSNMLP00000000279	ENSNMLP00000029427	SH3-domain GRB2-like 1b.	annotation not available	0.573
ENSNMLP00000000279	ENSNMLP00000029919	SH3-domain GRB2-like 1b.	annotation not available	0.701
ENSNMLP00000000279	ENSNMLP00000031703	SH3-domain GRB2-like 1b.	Synaptotagmin Vb.	0.413