(21 nodes) Regulation of mitotic spindle organization network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000042523	Centriole, cilia and spindle-associated protein b. (273 aa)
	ENSNMLP00000040491	Developmentally regulated GTP binding protein 1. (367 aa)
	ENSNMLP00000020868	Fibronectin type III and SPRY domain containing 1. (507 aa)
	ENSNMLP00000022244	Dynactin 1b. (1212 aa)
	ENSNMLP00000028734	annotation not available (247 aa)
	ENSNMLP00000029953	Poly (ADP-ribose) polymerase family, member 3. (459 aa)
	ENSNMLP00000032117	Centrosomal protein 97. (657 aa)
	ENSNMLP00000032750	annotation not available (845 aa)
	ENSNMLP00000034691	annotation not available (408 aa)
	ENSNMLP00000023774	annotation not available (360 aa)
	ENSNMLP00000023899	annotation not available (598 aa)
	ENSNMLP00000024660	TPX2 microtubule nucleation factor. (515 aa)
	ENSNMLP00000026187	annotation not available (663 aa)
	ENSNMLP00000026658	annotation not available (1607 aa)
	ENSNMLP00000027248	Bora aurora kinase A activator. (602 aa)
	ENSNMLP00000027592	Ribonucleic acid export 1. (369 aa)
	ENSNMLP00000035042	SAS-6 centriolar assembly protein. (579 aa)
	ENSNMLP00000017851	annotation not available (377 aa)
	ENSNMLP00000009995	annotation not available (131 aa)
	ENSNMLP00000007296	annotation not available (591 aa)
	ENSNMLP00000045002	G protein signaling modulator 2, like. (617 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000007296	ENSNMLP00000023899	annotation not available	annotation not available	0.849
ENSNMLP00000009995	ENSNMLP00000026658	annotation not available	annotation not available	0.512
ENSNMLP00000017851	ENSNMLP00000026187	annotation not available	annotation not available	0.841
ENSNMLP00000017851	ENSNMLP00000045002	annotation not available	G protein signaling modulator 2, like.	0.836
ENSNMLP00000022244	ENSNMLP00000026658	Dynactin 1b.	annotation not available	0.512
ENSNMLP00000023774	ENSNMLP00000026187	annotation not available	annotation not available	0.841
ENSNMLP00000023774	ENSNMLP00000045002	annotation not available	G protein signaling modulator 2, like.	0.836
ENSNMLP00000023899	ENSNMLP00000007296	annotation not available	annotation not available	0.849
ENSNMLP00000026187	ENSNMLP00000017851	annotation not available	annotation not available	0.841
ENSNMLP00000026187	ENSNMLP00000023774	annotation not available	annotation not available	0.841
ENSNMLP00000026187	ENSNMLP00000026658	annotation not available	annotation not available	0.963
ENSNMLP00000026658	ENSNMLP00000009995	annotation not available	annotation not available	0.512
ENSNMLP00000026658	ENSNMLP00000022244	annotation not available	Dynactin 1b.	0.512
ENSNMLP00000026658	ENSNMLP00000026187	annotation not available	annotation not available	0.963
ENSNMLP00000026658	ENSNMLP00000027592	annotation not available	Ribonucleic acid export 1.	0.444
ENSNMLP00000026658	ENSNMLP00000045002	annotation not available	G protein signaling modulator 2, like.	0.941
ENSNMLP00000027592	ENSNMLP00000026658	Ribonucleic acid export 1.	annotation not available	0.444
ENSNMLP00000029953	ENSNMLP00000035042	Poly (ADP-ribose) polymerase family, member 3.	SAS-6 centriolar assembly protein.	0.612
ENSNMLP00000032750	ENSNMLP00000035042	annotation not available	SAS-6 centriolar assembly protein.	0.979
ENSNMLP00000035042	ENSNMLP00000029953	SAS-6 centriolar assembly protein.	Poly (ADP-ribose) polymerase family, member 3.	0.612