(35 nodes) Regulation of protein processing network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000004772	S100 calcium binding protein A10a. (96 aa)
	ENSNMLP00000005253	annotation not available (144 aa)
	ENSNMLP00000005405	Zmp:0000000662. (685 aa)
	ENSNMLP00000005913	Fibroblast growth factor 2. (155 aa)
	ENSNMLP00000006796	Spondin 1a. (758 aa)
	ENSNMLP00000008650	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000010473	C-type lectin domain family 3, member Ba. (197 aa)
	ENSNMLP00000012077	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000014007	Low density lipoprotein receptor class A domain containing 3. (328 aa)
	ENSNMLP00000019378	Rhomboid domain containing 1. (293 aa)
	ENSNMLP00000020236	annotation not available (398 aa)
	ENSNMLP00000022547	BCL2 associated athanogene 2. (193 aa)
	ENSNMLP00000024237	Golgi glycoprotein 1a. (1122 aa)
	ENSNMLP00000024742	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a. (326 aa)
	ENSNMLP00000027135	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2. (386 aa)
	ENSNMLP00000027207	annotation not available (206 aa)
	ENSNMLP00000027351	annotation not available (396 aa)
	ENSNMLP00000043743	ChaC, cation transport regulator homolog 1 (E. coli). (196 aa)
	ENSNMLP00000030363	annotation not available (364 aa)
	ENSNMLP00000030616	CLN3 lysosomal/endosomal transmembrane protein, battenin. (428 aa)
	CLEC3B	C-type lectin domain family 3 member B. (187 aa)
	ENSNMLP00000031354	annotation not available (265 aa)
	ENSNMLP00000033726	annotation not available (365 aa)
	ENSNMLP00000033933	Plasminogen receptor, C-terminal lysine transmembrane protein. (149 aa)
	ENSNMLP00000037714	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1. (399 aa)
	ENSNMLP00000038928	Growth arrest-specific 1a. (245 aa)
	ENSNMLP00000039103	Transmembrane protein 98. (224 aa)
	ENSNMLP00000041186	Lysophosphatidylcholine acyltransferase 3. (459 aa)
	ENSNMLP00000040624	Cathepsin Z. (271 aa)
	ENSNMLP00000000112	annotation not available (374 aa)
	ENSNMLP00000000644	Ring finger protein 139. (634 aa)
	ENSNMLP00000002516	annotation not available (128 aa)
	ENSNMLP00000003654	annotation not available (780 aa)
	ENSNMLP00000003816	annotation not available (241 aa)
	ENSNMLP00000004553	Hepsin. (425 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000112	ENSNMLP00000004553	annotation not available	Hepsin.	0.550
ENSNMLP00000003816	ENSNMLP00000024742	annotation not available	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	0.822
ENSNMLP00000003816	ENSNMLP00000027351	annotation not available	annotation not available	0.820
ENSNMLP00000004553	ENSNMLP00000000112	Hepsin.	annotation not available	0.550
ENSNMLP00000014007	ENSNMLP00000031354	Low density lipoprotein receptor class A domain containing 3.	annotation not available	0.429
ENSNMLP00000014007	ENSNMLP00000038928	Low density lipoprotein receptor class A domain containing 3.	Growth arrest-specific 1a.	0.429
ENSNMLP00000024742	ENSNMLP00000003816	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	annotation not available	0.822
ENSNMLP00000027135	ENSNMLP00000037714	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1.	0.681
ENSNMLP00000027207	ENSNMLP00000043743	annotation not available	ChaC, cation transport regulator homolog 1 (E. coli).	0.839
ENSNMLP00000027351	ENSNMLP00000003816	annotation not available	annotation not available	0.820
ENSNMLP00000031354	ENSNMLP00000014007	annotation not available	Low density lipoprotein receptor class A domain containing 3.	0.429
ENSNMLP00000031354	ENSNMLP00000038928	annotation not available	Growth arrest-specific 1a.	0.847
ENSNMLP00000037714	ENSNMLP00000027135	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2.	0.681
ENSNMLP00000038928	ENSNMLP00000014007	Growth arrest-specific 1a.	Low density lipoprotein receptor class A domain containing 3.	0.429
ENSNMLP00000038928	ENSNMLP00000031354	Growth arrest-specific 1a.	annotation not available	0.847
ENSNMLP00000043743	ENSNMLP00000027207	ChaC, cation transport regulator homolog 1 (E. coli).	annotation not available	0.839