(10 nodes) Regulation of inclusion body assembly network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000817	annotation not available (646 aa)
	ENSNMLP00000000739	annotation not available (696 aa)
	ENSNMLP00000000843	annotation not available (707 aa)
	ENSNMLP00000006433	Sortilin-related receptor, L(DLR class) A repeats containing. (2241 aa)
	ENSNMLP00000008014	annotation not available (642 aa)
	ENSNMLP00000031978	Sacsin molecular chaperone. (3846 aa)
	ENSNMLP00000007571	annotation not available (62 aa)
	ENSNMLP00000007504	Synuclein, alpha interacting protein. (652 aa)
	ENSNMLP00000000830	annotation not available (744 aa)
	ENSNMLP00000000838	annotation not available (557 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000739	ENSNMLP00000000838	annotation not available	annotation not available	0.933
ENSNMLP00000000817	ENSNMLP00000000838	annotation not available	annotation not available	0.930
ENSNMLP00000000830	ENSNMLP00000000838	annotation not available	annotation not available	0.939
ENSNMLP00000000838	ENSNMLP00000000739	annotation not available	annotation not available	0.933
ENSNMLP00000000838	ENSNMLP00000000817	annotation not available	annotation not available	0.930
ENSNMLP00000000838	ENSNMLP00000000830	annotation not available	annotation not available	0.939
ENSNMLP00000000838	ENSNMLP00000000843	annotation not available	annotation not available	0.932
ENSNMLP00000000838	ENSNMLP00000008014	annotation not available	annotation not available	0.930
ENSNMLP00000000843	ENSNMLP00000000838	annotation not available	annotation not available	0.932
ENSNMLP00000008014	ENSNMLP00000000838	annotation not available	annotation not available	0.930