(14 nodes) Very-low-density lipoprotein particle network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000002019	Low density lipoprotein receptor b. (766 aa)
	ENSNMLP00000029846	annotation not available (869 aa)
	ENSNMLP00000032026	Low density lipoprotein receptor a. (908 aa)
	ENSNMLP00000016570	annotation not available (981 aa)
	ENSNMLP00000044370	annotation not available (182 aa)
	ENSNMLP00000042649	Very low density lipoprotein receptor. (904 aa)
	ENSNMLP00000040609	Prenylcysteine oxidase 1. (533 aa)
	ENSNMLP00000028367	Apolipoprotein Bb, tandem duplicate 2. (3806 aa)
	ENSNMLP00000019802	annotation not available (79 aa)
	ENSNMLP00000016095	annotation not available (628 aa)
	ENSNMLP00000015124	Scaffold attachment factor B. (464 aa)
	ENSNMLP00000008610	annotation not available (459 aa)
	ENSNMLP00000013909	Lipoprotein lipase. (511 aa)
	ENSNMLP00000007134	Prenylcysteine oxidase 1 like. (376 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000002019	ENSNMLP00000008610	Low density lipoprotein receptor b.	annotation not available	0.468
ENSNMLP00000002019	ENSNMLP00000013909	Low density lipoprotein receptor b.	Lipoprotein lipase.	0.468
ENSNMLP00000002019	ENSNMLP00000028367	Low density lipoprotein receptor b.	Apolipoprotein Bb, tandem duplicate 2.	0.827
ENSNMLP00000007134	ENSNMLP00000019802	Prenylcysteine oxidase 1 like.	annotation not available	0.795
ENSNMLP00000007134	ENSNMLP00000028367	Prenylcysteine oxidase 1 like.	Apolipoprotein Bb, tandem duplicate 2.	0.810
ENSNMLP00000007134	ENSNMLP00000040609	Prenylcysteine oxidase 1 like.	Prenylcysteine oxidase 1.	0.842
ENSNMLP00000008610	ENSNMLP00000002019	annotation not available	Low density lipoprotein receptor b.	0.468
ENSNMLP00000008610	ENSNMLP00000013909	annotation not available	Lipoprotein lipase.	0.840
ENSNMLP00000008610	ENSNMLP00000016095	annotation not available	annotation not available	0.768
ENSNMLP00000008610	ENSNMLP00000016570	annotation not available	annotation not available	0.468
ENSNMLP00000008610	ENSNMLP00000028367	annotation not available	Apolipoprotein Bb, tandem duplicate 2.	0.802
ENSNMLP00000008610	ENSNMLP00000029846	annotation not available	annotation not available	0.468
ENSNMLP00000008610	ENSNMLP00000032026	annotation not available	Low density lipoprotein receptor a.	0.468
ENSNMLP00000008610	ENSNMLP00000042649	annotation not available	Very low density lipoprotein receptor.	0.468
ENSNMLP00000013909	ENSNMLP00000002019	Lipoprotein lipase.	Low density lipoprotein receptor b.	0.468
ENSNMLP00000013909	ENSNMLP00000008610	Lipoprotein lipase.	annotation not available	0.840
ENSNMLP00000013909	ENSNMLP00000016095	Lipoprotein lipase.	annotation not available	0.802
ENSNMLP00000013909	ENSNMLP00000016570	Lipoprotein lipase.	annotation not available	0.468
ENSNMLP00000013909	ENSNMLP00000028367	Lipoprotein lipase.	Apolipoprotein Bb, tandem duplicate 2.	0.802
ENSNMLP00000013909	ENSNMLP00000029846	Lipoprotein lipase.	annotation not available	0.468