(11 nodes) High-density lipoprotein particle network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000037182	Apolipoprotein F. (308 aa)
	ENSNMLP00000015405	Zgc:162608. (327 aa)
	ENSNMLP00000018404	annotation not available (262 aa)
	ENSNMLP00000019793	annotation not available (307 aa)
	ENSNMLP00000019797	annotation not available (255 aa)
	ENSNMLP00000019802	annotation not available (79 aa)
	ENSNMLP00000019818	Apolipoprotein C-II. (98 aa)
	ENSNMLP00000020069	Cholesteryl ester transfer protein, plasma. (504 aa)
	ENSNMLP00000034029	Lipase, hepatic a. (497 aa)
	ENSNMLP00000035622	Phospholipid transfer protein. (483 aa)
	ENSNMLP00000038758	Lecithin-cholesterol acyltransferase. (462 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000018404	ENSNMLP00000019793	annotation not available	annotation not available	0.786
ENSNMLP00000018404	ENSNMLP00000019797	annotation not available	annotation not available	0.795
ENSNMLP00000018404	ENSNMLP00000019802	annotation not available	annotation not available	0.889
ENSNMLP00000018404	ENSNMLP00000019818	annotation not available	Apolipoprotein C-II.	0.403
ENSNMLP00000018404	ENSNMLP00000020069	annotation not available	Cholesteryl ester transfer protein, plasma.	0.872
ENSNMLP00000018404	ENSNMLP00000035622	annotation not available	Phospholipid transfer protein.	0.869
ENSNMLP00000018404	ENSNMLP00000037182	annotation not available	Apolipoprotein F.	0.449
ENSNMLP00000018404	ENSNMLP00000038758	annotation not available	Lecithin-cholesterol acyltransferase.	0.963
ENSNMLP00000019793	ENSNMLP00000018404	annotation not available	annotation not available	0.786
ENSNMLP00000019793	ENSNMLP00000019802	annotation not available	annotation not available	0.889
ENSNMLP00000019793	ENSNMLP00000020069	annotation not available	Cholesteryl ester transfer protein, plasma.	0.896
ENSNMLP00000019793	ENSNMLP00000035622	annotation not available	Phospholipid transfer protein.	0.878
ENSNMLP00000019793	ENSNMLP00000037182	annotation not available	Apolipoprotein F.	0.442
ENSNMLP00000019793	ENSNMLP00000038758	annotation not available	Lecithin-cholesterol acyltransferase.	0.970
ENSNMLP00000019797	ENSNMLP00000018404	annotation not available	annotation not available	0.795
ENSNMLP00000019797	ENSNMLP00000019802	annotation not available	annotation not available	0.889
ENSNMLP00000019797	ENSNMLP00000020069	annotation not available	Cholesteryl ester transfer protein, plasma.	0.896
ENSNMLP00000019797	ENSNMLP00000035622	annotation not available	Phospholipid transfer protein.	0.878
ENSNMLP00000019797	ENSNMLP00000037182	annotation not available	Apolipoprotein F.	0.442
ENSNMLP00000019797	ENSNMLP00000038758	annotation not available	Lecithin-cholesterol acyltransferase.	0.970