(12 nodes) MLL3/4 complex network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000010042	annotation not available (572 aa)
	ENSNMLP00000041360	annotation not available (134 aa)
	ENSNMLP00000040448	annotation not available (1385 aa)
	ENSNMLP00000038196	annotation not available (167 aa)
	ENSNMLP00000036520	PAXIP1 associated glutamate-rich protein 1. (275 aa)
	ENSNMLP00000036107	Lysine (K)-specific demethylase 6B, b. (1647 aa)
	ENSNMLP00000032651	Transmembrane protein 182a. (238 aa)
	ENSNMLP00000030279	annotation not available (226 aa)
	ENSNMLP00000024711	annotation not available (109 aa)
	ENSNMLP00000018403	annotation not available (192 aa)
	ENSNMLP00000013906	Ring finger protein 166. (244 aa)
	ENSNMLP00000003752	annotation not available (170 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000003752	ENSNMLP00000010042	annotation not available	annotation not available	0.985
ENSNMLP00000003752	ENSNMLP00000018403	annotation not available	annotation not available	0.680
ENSNMLP00000003752	ENSNMLP00000024711	annotation not available	annotation not available	0.925
ENSNMLP00000003752	ENSNMLP00000036107	annotation not available	Lysine (K)-specific demethylase 6B, b.	0.985
ENSNMLP00000003752	ENSNMLP00000036520	annotation not available	PAXIP1 associated glutamate-rich protein 1.	0.944
ENSNMLP00000003752	ENSNMLP00000040448	annotation not available	annotation not available	0.985
ENSNMLP00000010042	ENSNMLP00000003752	annotation not available	annotation not available	0.985
ENSNMLP00000010042	ENSNMLP00000018403	annotation not available	annotation not available	0.917
ENSNMLP00000010042	ENSNMLP00000024711	annotation not available	annotation not available	0.963
ENSNMLP00000010042	ENSNMLP00000036107	annotation not available	Lysine (K)-specific demethylase 6B, b.	0.842
ENSNMLP00000010042	ENSNMLP00000036520	annotation not available	PAXIP1 associated glutamate-rich protein 1.	0.980
ENSNMLP00000010042	ENSNMLP00000038196	annotation not available	annotation not available	0.985
ENSNMLP00000010042	ENSNMLP00000040448	annotation not available	annotation not available	0.850
ENSNMLP00000010042	ENSNMLP00000041360	annotation not available	annotation not available	0.985
ENSNMLP00000018403	ENSNMLP00000003752	annotation not available	annotation not available	0.680
ENSNMLP00000018403	ENSNMLP00000010042	annotation not available	annotation not available	0.917
ENSNMLP00000018403	ENSNMLP00000024711	annotation not available	annotation not available	0.979
ENSNMLP00000018403	ENSNMLP00000036107	annotation not available	Lysine (K)-specific demethylase 6B, b.	0.917
ENSNMLP00000018403	ENSNMLP00000036520	annotation not available	PAXIP1 associated glutamate-rich protein 1.	0.953
ENSNMLP00000018403	ENSNMLP00000038196	annotation not available	annotation not available	0.680