(21 nodes) HDL assembly network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000360	Pleckstrin homology domain containing, family D (with coiled-coil domains) member 1. (450 aa)
	ENSNMLP00000003529	annotation not available (1156 aa)
	ENSNMLP00000003816	annotation not available (241 aa)
	ENSNMLP00000006345	annotation not available (126 aa)
	ENSNMLP00000006366	annotation not available (188 aa)
	ENSNMLP00000006377	annotation not available (535 aa)
	ENSNMLP00000008650	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000010097	annotation not available (731 aa)
	ENSNMLP00000010353	Patched domain containing 4. (925 aa)
	ENSNMLP00000012077	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b. (234 aa)
	ENSNMLP00000014127	annotation not available (1392 aa)
	PTCHD3	Patched domain containing 3. (831 aa)
	ENSNMLP00000018404	annotation not available (262 aa)
	ENSNMLP00000024742	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a. (326 aa)
	ENSNMLP00000025889	Zinc finger DHHC-type containing 8b. (756 aa)
	ENSNMLP00000027351	annotation not available (396 aa)
	ENSNMLP00000028021	annotation not available (689 aa)
	ENSNMLP00000033904	ATP-binding cassette, sub-family A (ABC1), member 1A. (2221 aa)
	ENSNMLP00000000891	annotation not available (321 aa)
	ENSNMLP00000003544	annotation not available (459 aa)
	ENSNMLP00000001104	annotation not available (254 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001104	ENSNMLP00000018404	annotation not available	annotation not available	0.685
ENSNMLP00000003816	ENSNMLP00000024742	annotation not available	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	0.822
ENSNMLP00000003816	ENSNMLP00000027351	annotation not available	annotation not available	0.820
ENSNMLP00000006345	ENSNMLP00000006366	annotation not available	annotation not available	0.891
ENSNMLP00000006345	ENSNMLP00000006377	annotation not available	annotation not available	0.900
ENSNMLP00000006366	ENSNMLP00000006345	annotation not available	annotation not available	0.891
ENSNMLP00000006366	ENSNMLP00000006377	annotation not available	annotation not available	0.881
ENSNMLP00000006377	ENSNMLP00000006345	annotation not available	annotation not available	0.900
ENSNMLP00000006377	ENSNMLP00000006366	annotation not available	annotation not available	0.881
ENSNMLP00000018404	ENSNMLP00000001104	annotation not available	annotation not available	0.685
ENSNMLP00000018404	ENSNMLP00000033904	annotation not available	ATP-binding cassette, sub-family A (ABC1), member 1A.	0.685
ENSNMLP00000024742	ENSNMLP00000003816	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a.	annotation not available	0.822
ENSNMLP00000027351	ENSNMLP00000003816	annotation not available	annotation not available	0.820
ENSNMLP00000033904	ENSNMLP00000018404	ATP-binding cassette, sub-family A (ABC1), member 1A.	annotation not available	0.685