(21 nodes) A domain family that is part of the cupin metalloenzyme superfamily. network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000106	Ribosomal oxygenase 1. (488 aa)
	ENSNMLP00000010042	annotation not available (572 aa)
	ENSNMLP00000011575	Jumonji domain containing 7. (326 aa)
	ENSNMLP00000012033	Lysine (K)-specific demethylase 4A, genome duplicate a. (926 aa)
	ENSNMLP00000014182	Lysine (K)-specific demethylase 4B. (1131 aa)
	ENSNMLP00000014409	Lysine (K)-specific demethylase 4A, genome duplicate b. (1001 aa)
	ENSNMLP00000016616	Lysine (K)-specific demethylase 7Ab. (554 aa)
	ENSNMLP00000017019	PHD finger protein 2. (1069 aa)
	ENSNMLP00000017381	Lysine (K)-specific demethylase 2Bb. (1148 aa)
	ENSNMLP00000018168	tRNA-yW synthesizing protein 5. (327 aa)
	ENSNMLP00000023617	annotation not available (1188 aa)
	ENSNMLP00000027615	Lysine (K)-specific demethylase 2Ab. (570 aa)
	ENSNMLP00000030629	Jumonji domain containing 4. (406 aa)
	ENSNMLP00000030787	Lysine (K)-specific demethylase 4C. (1410 aa)
	ENSNMLP00000031037	Hspb associated protein 1. (461 aa)
	ENSNMLP00000033545	Lysine (K)-specific demethylase 5Bb. (1432 aa)
	ENSNMLP00000036107	Lysine (K)-specific demethylase 6B, b. (1647 aa)
	ENSNMLP00000039081	Lysine (K)-specific demethylase 5Ba. (1402 aa)
	ENSNMLP00000040272	Hypoxia inducible factor 1 subunit alpha inhibitor. (354 aa)
	ENSNMLP00000040448	annotation not available (1385 aa)
	ENSNMLP00000042825	Lysine (K)-specific demethylase 5A. (1188 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000106	ENSNMLP00000030629	Ribosomal oxygenase 1.	Jumonji domain containing 4.	0.522
ENSNMLP00000000106	ENSNMLP00000031037	Ribosomal oxygenase 1.	Hspb associated protein 1.	0.522
ENSNMLP00000010042	ENSNMLP00000012033	annotation not available	Lysine (K)-specific demethylase 4A, genome duplicate a.	0.527
ENSNMLP00000010042	ENSNMLP00000014182	annotation not available	Lysine (K)-specific demethylase 4B.	0.527
ENSNMLP00000010042	ENSNMLP00000014409	annotation not available	Lysine (K)-specific demethylase 4A, genome duplicate b.	0.527
ENSNMLP00000010042	ENSNMLP00000016616	annotation not available	Lysine (K)-specific demethylase 7Ab.	0.575
ENSNMLP00000010042	ENSNMLP00000017019	annotation not available	PHD finger protein 2.	0.575
ENSNMLP00000010042	ENSNMLP00000017381	annotation not available	Lysine (K)-specific demethylase 2Bb.	0.971
ENSNMLP00000010042	ENSNMLP00000023617	annotation not available	annotation not available	0.971
ENSNMLP00000010042	ENSNMLP00000027615	annotation not available	Lysine (K)-specific demethylase 2Ab.	0.971
ENSNMLP00000010042	ENSNMLP00000030787	annotation not available	Lysine (K)-specific demethylase 4C.	0.527
ENSNMLP00000010042	ENSNMLP00000033545	annotation not available	Lysine (K)-specific demethylase 5Bb.	0.408
ENSNMLP00000010042	ENSNMLP00000036107	annotation not available	Lysine (K)-specific demethylase 6B, b.	0.842
ENSNMLP00000010042	ENSNMLP00000039081	annotation not available	Lysine (K)-specific demethylase 5Ba.	0.408
ENSNMLP00000010042	ENSNMLP00000040448	annotation not available	annotation not available	0.850
ENSNMLP00000010042	ENSNMLP00000042825	annotation not available	Lysine (K)-specific demethylase 5A.	0.408
ENSNMLP00000012033	ENSNMLP00000010042	Lysine (K)-specific demethylase 4A, genome duplicate a.	annotation not available	0.527
ENSNMLP00000012033	ENSNMLP00000033545	Lysine (K)-specific demethylase 4A, genome duplicate a.	Lysine (K)-specific demethylase 5Bb.	0.428
ENSNMLP00000012033	ENSNMLP00000036107	Lysine (K)-specific demethylase 4A, genome duplicate a.	Lysine (K)-specific demethylase 6B, b.	0.527
ENSNMLP00000012033	ENSNMLP00000039081	Lysine (K)-specific demethylase 4A, genome duplicate a.	Lysine (K)-specific demethylase 5Ba.	0.428