(44 nodes) Mismatch repair network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000000458	Replication protein A1. (633 aa)
	ENSNMLP00000001425	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (728 aa)
	ISG20L2	Interferon stimulated exonuclease gene 20 like 2. (393 aa)
	ENSNMLP00000003746	Ligase I, DNA, ATP-dependent. (649 aa)
	ENSNMLP00000005874	Replication factor C (activator 1) 3. (356 aa)
	ENSNMLP00000009522	annotation not available (169 aa)
	RPA1	Replication protein A1. (577 aa)
	ENSNMLP00000012215	annotation not available (86 aa)
	ENSNMLP00000012217	mutS homolog 4. (361 aa)
	ENSNMLP00000012348	Si:dkey-28b4.7. (107 aa)
	ENSNMLP00000013297	STN1 subunit of CST complex. (347 aa)
	ENSNMLP00000015063	mutL homolog 3 (E. coli). (1124 aa)
	ENSNMLP00000016308	RAD17 checkpoint clamp loader component. (515 aa)
	ENSNMLP00000018363	PMS1 homolog 1, mismatch repair system component. (893 aa)
	ENSNMLP00000019496	Proliferating cell nuclear antigen. (260 aa)
	ENSNMLP00000020336	Replication protein A2. (271 aa)
	ENSNMLP00000020460	PRKR interacting protein 1. (188 aa)
	ENSNMLP00000020578	mutS homolog 3 (E. coli). (996 aa)
	ENSNMLP00000021007	annotation not available (248 aa)
	ENSNMLP00000023076	PMS1 homolog 2, mismatch repair system component. (851 aa)
	ENSNMLP00000025339	annotation not available (166 aa)
	ENSNMLP00000025347	annotation not available (189 aa)
	ENSNMLP00000027991	mutS homolog 2 (E. coli). (935 aa)
	ENSNMLP00000028891	Methionine sulfoxide reductase B1b. (254 aa)
	ENSNMLP00000029788	annotation not available (181 aa)
	ENSNMLP00000030019	annotation not available (160 aa)
	ENSNMLP00000030511	annotation not available (573 aa)
	ENSNMLP00000031696	REX4 homolog, 3'-5' exonuclease. (229 aa)
	ENSNMLP00000033412	Single-stranded DNA binding protein 1. (163 aa)
	ENSNMLP00000033846	Exonuclease 1. (784 aa)
	ENSNMLP00000034534	F-box DNA helicase 1. (1044 aa)
	ENSNMLP00000035042	SAS-6 centriolar assembly protein. (579 aa)
	ENSNMLP00000035650	Replication factor C (activator 1) 2. (466 aa)
	ENSNMLP00000036137	Polymerase (DNA directed), delta 1, catalytic subunit. (1145 aa)
	ENSNMLP00000036497	Calcium binding protein 5a. (169 aa)
	ENSNMLP00000037576	Ligase I, DNA, ATP-dependent. (907 aa)
	ENSNMLP00000039402	Src homology 2 domain containing transforming protein D, a. (398 aa)
	ENSNMLP00000039412	YJU2 splicing factor homolog. (342 aa)
	ENSNMLP00000041487	annotation not available (331 aa)
	ENSNMLP00000042368	Replication factor C (activator 1) 4. (358 aa)
	ENSNMLP00000042996	Polymerase (DNA directed), delta 2, regulatory subunit. (476 aa)
	ENSNMLP00000044233	annotation not available (195 aa)
	ENSNMLP00000044235	annotation not available (200 aa)
	ENSNMLP00000044628	Replication protein A3. (130 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000458	ENSNMLP00000001425	ENSNMLP00000000458	ENSNMLP00000001425	Replication protein A1.	mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).	0.704
ENSNMLP00000000458	ENSNMLP00000003746	ENSNMLP00000000458	ENSNMLP00000003746	Replication protein A1.	Ligase I, DNA, ATP-dependent.	0.759
ENSNMLP00000000458	ENSNMLP00000005874	ENSNMLP00000000458	ENSNMLP00000005874	Replication protein A1.	Replication factor C (activator 1) 3.	0.887
ENSNMLP00000000458	ENSNMLP00000012215	ENSNMLP00000000458	ENSNMLP00000012215	Replication protein A1.	annotation not available	0.685
ENSNMLP00000000458	ENSNMLP00000012217	ENSNMLP00000000458	ENSNMLP00000012217	Replication protein A1.	mutS homolog 4.	0.685
ENSNMLP00000000458	ENSNMLP00000013297	ENSNMLP00000000458	ENSNMLP00000013297	Replication protein A1.	STN1 subunit of CST complex.	0.937
ENSNMLP00000000458	ENSNMLP00000015063	ENSNMLP00000000458	ENSNMLP00000015063	Replication protein A1.	mutL homolog 3 (E. coli).	0.498
ENSNMLP00000000458	ENSNMLP00000016308	ENSNMLP00000000458	ENSNMLP00000016308	Replication protein A1.	RAD17 checkpoint clamp loader component.	0.931
ENSNMLP00000000458	ENSNMLP00000018363	ENSNMLP00000000458	ENSNMLP00000018363	Replication protein A1.	PMS1 homolog 1, mismatch repair system component.	0.569
ENSNMLP00000000458	ENSNMLP00000019496	ENSNMLP00000000458	ENSNMLP00000019496	Replication protein A1.	Proliferating cell nuclear antigen.	0.970
ENSNMLP00000000458	ENSNMLP00000020336	ENSNMLP00000000458	ENSNMLP00000020336	Replication protein A1.	Replication protein A2.	0.984
ENSNMLP00000000458	ENSNMLP00000020578	ENSNMLP00000000458	ENSNMLP00000020578	Replication protein A1.	mutS homolog 3 (E. coli).	0.712
ENSNMLP00000000458	ENSNMLP00000021007	ENSNMLP00000000458	ENSNMLP00000021007	Replication protein A1.	annotation not available	0.983
ENSNMLP00000000458	ENSNMLP00000023076	ENSNMLP00000000458	ENSNMLP00000023076	Replication protein A1.	PMS1 homolog 2, mismatch repair system component.	0.644
ENSNMLP00000000458	ENSNMLP00000027991	ENSNMLP00000000458	ENSNMLP00000027991	Replication protein A1.	mutS homolog 2 (E. coli).	0.910
ENSNMLP00000000458	ENSNMLP00000030511	ENSNMLP00000000458	ENSNMLP00000030511	Replication protein A1.	annotation not available	0.921
ENSNMLP00000000458	ENSNMLP00000033412	ENSNMLP00000000458	ENSNMLP00000033412	Replication protein A1.	Single-stranded DNA binding protein 1.	0.559
ENSNMLP00000000458	ENSNMLP00000033846	ENSNMLP00000000458	ENSNMLP00000033846	Replication protein A1.	Exonuclease 1.	0.888
ENSNMLP00000000458	ENSNMLP00000034534	ENSNMLP00000000458	ENSNMLP00000034534	Replication protein A1.	F-box DNA helicase 1.	0.718
ENSNMLP00000000458	ENSNMLP00000035042	ENSNMLP00000000458	ENSNMLP00000035042	Replication protein A1.	SAS-6 centriolar assembly protein.	0.902