(95 nodes) Homologous recombination network (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNMLP00000044012	BRISC and BRCA1 A complex member 2. (376 aa)
	ENSNMLP00000044256	RAD54 homolog B. (917 aa)
	ENSNMLP00000044628	Replication protein A3. (130 aa)
	ENSNMLP00000000149	SEM1 26S proteasome complex subunit. (70 aa)
	ENSNMLP00000000449	RecQ helicase-like 4. (1060 aa)
	ENSNMLP00000000458	Replication protein A1. (633 aa)
	ENSNMLP00000000553	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1. (209 aa)
	ENSNMLP00000000900	annotation not available (366 aa)
	ENSNMLP00000000957	annotation not available (1247 aa)
	ENSNMLP00000001539	annotation not available (349 aa)
	ENSNMLP00000001771	annotation not available (1176 aa)
	ENSNMLP00000001891	annotation not available (80 aa)
	ENSNMLP00000001897	annotation not available (237 aa)
	ENSNMLP00000002406	RAD51 recombinase. (339 aa)
	ENSNMLP00000002621	RAD51 paralog D. (304 aa)
	ENSNMLP00000002887	annotation not available (566 aa)
	ENSNMLP00000003690	annotation not available (298 aa)
	ENSNMLP00000004343	2',3'-cyclic nucleotide 3' phosphodiesterase. (438 aa)
	ENSNMLP00000004974	annotation not available (94 aa)
	ENSNMLP00000004987	annotation not available (225 aa)
	ENSNMLP00000005456	DNA meiotic recombinase 1. (342 aa)
	ENSNMLP00000005578	Synaptonemal complex protein 3. (233 aa)
	ENSNMLP00000006480	annotation not available (977 aa)
	ENSNMLP00000008166	annotation not available (437 aa)
	ENSNMLP00000008843	annotation not available (967 aa)
	ENSNMLP00000009522	annotation not available (169 aa)
	ENSNMLP00000010391	annotation not available (999 aa)
	ENSNMLP00000011860	annotation not available (372 aa)
	RPA1	Replication protein A1. (577 aa)
	ENSNMLP00000012348	Si:dkey-28b4.7. (107 aa)
	ENSNMLP00000012449	BRCA1 interacting protein C-terminal helicase 1. (924 aa)
	ENSNMLP00000012611	ATRX chromatin remodeler. (1727 aa)
	ENSNMLP00000013042	Unc-93 homolog B1, TLR signaling regulator. (596 aa)
	ENSNMLP00000013297	STN1 subunit of CST complex. (347 aa)
	ENSNMLP00000013517	annotation not available (66 aa)
	ENSNMLP00000013607	annotation not available (1392 aa)
	ENSNMLP00000016033	annotation not available (1168 aa)
	ENSNMLP00000016142	Transmembrane 6 superfamily member 2. (381 aa)
	ENSNMLP00000016158	annotation not available (273 aa)
	ENSNMLP00000016805	BRCA1 associated RING domain 1. (561 aa)
	ENSNMLP00000016826	annotation not available (278 aa)
	ENSNMLP00000016867	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (601 aa)
	ENSNMLP00000016933	annotation not available (431 aa)
	ENSNMLP00000017352	annotation not available (1086 aa)
	ENSNMLP00000017985	annotation not available (548 aa)
	ENSNMLP00000017992	annotation not available (121 aa)
	ENSNMLP00000018692	PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae). (631 aa)
	ENSNMLP00000018894	RAD50 homolog, double strand break repair protein. (633 aa)
	ENSNMLP00000019280	annotation not available (205 aa)
	ENSNMLP00000019533	annotation not available (228 aa)
	ENSNMLP00000020002	annotation not available (687 aa)
	ENSNMLP00000020250	annotation not available (1236 aa)
	ENSNMLP00000020336	Replication protein A2. (271 aa)
	ENSNMLP00000020460	PRKR interacting protein 1. (188 aa)
	ENSNMLP00000021007	annotation not available (248 aa)
	ENSNMLP00000021333	BLM RecQ like helicase. (868 aa)
	ENSNMLP00000022625	RAD52 homolog, DNA repair protein. (360 aa)
	ENSNMLP00000022662	RecQ helicase-like 5. (934 aa)
	PTGDR2	Prostaglandin D2 receptor 2. (376 aa)
	ENSNMLP00000024131	annotation not available (263 aa)
	ENSNMLP00000024286	annotation not available (525 aa)
	ENSNMLP00000024716	annotation not available (286 aa)
	ENSNMLP00000025256	RAD51 paralog C. (332 aa)
	ENSNMLP00000025310	MRE11 homolog A, double strand break repair nuclease. (704 aa)
	ENSNMLP00000025659	Essential meiotic structure-specific endonuclease 1. (482 aa)
	ENSNMLP00000025927	annotation not available (66 aa)
	ENSNMLP00000026034	BRCA1/BRCA2-containing complex, subunit 3. (281 aa)
	ENSNMLP00000026089	Zgc:85843. (283 aa)
	ENSNMLP00000026754	annotation not available (392 aa)
	ENSNMLP00000027413	Chromosome 12 open reading frame 66. (448 aa)
	ENSNMLP00000028438	annotation not available (158 aa)
	ENSNMLP00000028891	Methionine sulfoxide reductase B1b. (254 aa)
	ENSNMLP00000029445	DNA topoisomerase III beta. (842 aa)
	ENSNMLP00000030019	annotation not available (160 aa)
	ENSNMLP00000030258	Abraxas 2, BRISC complex subunit. (485 aa)
	ENSNMLP00000030556	annotation not available (653 aa)
	ENSNMLP00000032002	annotation not available (973 aa)
	ENSNMLP00000032576	Leucine rich adaptor protein 1. (341 aa)
	ENSNMLP00000033412	Single-stranded DNA binding protein 1. (163 aa)
	ENSNMLP00000033467	RAD54 like. (725 aa)
	ENSNMLP00000035042	SAS-6 centriolar assembly protein. (579 aa)
	ENSNMLP00000036137	Polymerase (DNA directed), delta 1, catalytic subunit. (1145 aa)
	ENSNMLP00000036677	Unc-93 homolog A. (441 aa)
	ENSNMLP00000039225	annotation not available (380 aa)
	ENSNMLP00000039234	annotation not available (492 aa)
	ENSNMLP00000039361	Abraxas 1, BRCA1 A complex subunit. (363 aa)
	ENSNMLP00000039402	Src homology 2 domain containing transforming protein D, a. (398 aa)
	ENSNMLP00000039412	YJU2 splicing factor homolog. (342 aa)
	ENSNMLP00000039877	Multiple coagulation factor deficiency 2. (153 aa)
	ENSNMLP00000040708	annotation not available (576 aa)
	ENSNMLP00000041882	annotation not available (899 aa)
	ENSNMLP00000042208	FIC domain containing. (512 aa)
	ENSNMLP00000042422	Regulator of telomere elongation helicase 1. (1230 aa)
	ENSNMLP00000042996	Polymerase (DNA directed), delta 2, regulatory subunit. (476 aa)
	ENSNMLP00000043668	BRISC and BRCA1 A complex member 1. (389 aa)

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000000149	ENSNMLP00000001539	ENSNMLP00000000149	ENSNMLP00000001539	SEM1 26S proteasome complex subunit.	annotation not available	0.993
ENSNMLP00000000149	ENSNMLP00000006480	ENSNMLP00000000149	ENSNMLP00000006480	SEM1 26S proteasome complex subunit.	annotation not available	0.853
ENSNMLP00000000149	ENSNMLP00000016805	ENSNMLP00000000149	ENSNMLP00000016805	SEM1 26S proteasome complex subunit.	BRCA1 associated RING domain 1.	0.842
ENSNMLP00000000149	ENSNMLP00000026034	ENSNMLP00000000149	ENSNMLP00000026034	SEM1 26S proteasome complex subunit.	BRCA1/BRCA2-containing complex, subunit 3.	0.981
ENSNMLP00000000149	ENSNMLP00000028438	ENSNMLP00000000149	ENSNMLP00000028438	SEM1 26S proteasome complex subunit.	annotation not available	0.801
ENSNMLP00000000449	ENSNMLP00000000458	ENSNMLP00000000449	ENSNMLP00000000458	RecQ helicase-like 4.	Replication protein A1.	0.940
ENSNMLP00000000449	ENSNMLP00000001539	ENSNMLP00000000449	ENSNMLP00000001539	RecQ helicase-like 4.	annotation not available	0.786
ENSNMLP00000000449	ENSNMLP00000002406	ENSNMLP00000000449	ENSNMLP00000002406	RecQ helicase-like 4.	RAD51 recombinase.	0.980
ENSNMLP00000000449	ENSNMLP00000002621	ENSNMLP00000000449	ENSNMLP00000002621	RecQ helicase-like 4.	RAD51 paralog D.	0.918
ENSNMLP00000000449	ENSNMLP00000004974	ENSNMLP00000000449	ENSNMLP00000004974	RecQ helicase-like 4.	annotation not available	0.899
ENSNMLP00000000449	ENSNMLP00000004987	ENSNMLP00000000449	ENSNMLP00000004987	RecQ helicase-like 4.	annotation not available	0.907
ENSNMLP00000000449	ENSNMLP00000005456	ENSNMLP00000000449	ENSNMLP00000005456	RecQ helicase-like 4.	DNA meiotic recombinase 1.	0.798
ENSNMLP00000000449	ENSNMLP00000006480	ENSNMLP00000000449	ENSNMLP00000006480	RecQ helicase-like 4.	annotation not available	0.803
ENSNMLP00000000449	ENSNMLP00000012449	ENSNMLP00000000449	ENSNMLP00000012449	RecQ helicase-like 4.	BRCA1 interacting protein C-terminal helicase 1.	0.763
ENSNMLP00000000449	ENSNMLP00000012611	ENSNMLP00000000449	ENSNMLP00000012611	RecQ helicase-like 4.	ATRX chromatin remodeler.	0.468
ENSNMLP00000000449	ENSNMLP00000013297	ENSNMLP00000000449	ENSNMLP00000013297	RecQ helicase-like 4.	STN1 subunit of CST complex.	0.795
ENSNMLP00000000449	ENSNMLP00000013517	ENSNMLP00000000449	ENSNMLP00000013517	RecQ helicase-like 4.	annotation not available	0.815
ENSNMLP00000000449	ENSNMLP00000013607	ENSNMLP00000000449	ENSNMLP00000013607	RecQ helicase-like 4.	annotation not available	0.799
ENSNMLP00000000449	ENSNMLP00000016805	ENSNMLP00000000449	ENSNMLP00000016805	RecQ helicase-like 4.	BRCA1 associated RING domain 1.	0.786
ENSNMLP00000000449	ENSNMLP00000017352	ENSNMLP00000000449	ENSNMLP00000017352	RecQ helicase-like 4.	annotation not available	0.775