(10 nodes) DNA modification, and Cro/C1-type HTH DNA-binding domain network (Hydrogenoanaerobacterium saccharovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	SEM46097.1	Type I restriction enzyme, R subunit. (1012 aa)
	SEM46128.1	Type I restriction enzyme M protein. (545 aa)
	SEM46147.1	Type I restriction enzyme, S subunit. (476 aa)
	SEM46177.1	Zn-dependent peptidase ImmA, M78 family. (194 aa)
	SEN00603.1	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1032 aa)
	SEN00618.1	AAA domain-containing protein. (403 aa)
	SEN00639.1	Type I restriction enzyme, S subunit. (385 aa)
	SEN00653.1	Uncharacterized conserved protein. (338 aa)
	SEN00676.1	Type I restriction enzyme M protein. (515 aa)
	SEN00686.1	DNA-binding transcriptional regulator, XRE family. (78 aa)

Your Current Organism:

Hydrogenoanaerobacterium saccharovorans

NCBI taxonomy Id: 474960
Other names: AS 1.5070, Clostridium sp. SW512, Clostridium sp. W72, H. saccharovorans, Hydrogenoanaerobacterium saccharovorans Song and Dong 2009, JCM 14861, strain SW512

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEM46097.1	SEM46128.1	SAMN05216180_0074	SAMN05216180_0075	Type I restriction enzyme, R subunit.	Type I restriction enzyme M protein.	0.989
SEM46097.1	SEM46147.1	SAMN05216180_0074	SAMN05216180_0076	Type I restriction enzyme, R subunit.	Type I restriction enzyme, S subunit.	0.981
SEM46097.1	SEM46177.1	SAMN05216180_0074	SAMN05216180_0077	Type I restriction enzyme, R subunit.	Zn-dependent peptidase ImmA, M78 family.	0.780
SEM46097.1	SEN00639.1	SAMN05216180_0074	SAMN05216180_2436	Type I restriction enzyme, R subunit.	Type I restriction enzyme, S subunit.	0.787
SEM46097.1	SEN00653.1	SAMN05216180_0074	SAMN05216180_2437	Type I restriction enzyme, R subunit.	Uncharacterized conserved protein.	0.626
SEM46097.1	SEN00676.1	SAMN05216180_0074	SAMN05216180_2438	Type I restriction enzyme, R subunit.	Type I restriction enzyme M protein.	0.935
SEM46128.1	SEM46097.1	SAMN05216180_0075	SAMN05216180_0074	Type I restriction enzyme M protein.	Type I restriction enzyme, R subunit.	0.989
SEM46128.1	SEM46147.1	SAMN05216180_0075	SAMN05216180_0076	Type I restriction enzyme M protein.	Type I restriction enzyme, S subunit.	0.996
SEM46128.1	SEM46177.1	SAMN05216180_0075	SAMN05216180_0077	Type I restriction enzyme M protein.	Zn-dependent peptidase ImmA, M78 family.	0.780
SEM46128.1	SEN00603.1	SAMN05216180_0075	SAMN05216180_2434	Type I restriction enzyme M protein.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.928
SEM46128.1	SEN00639.1	SAMN05216180_0075	SAMN05216180_2436	Type I restriction enzyme M protein.	Type I restriction enzyme, S subunit.	0.991
SEM46128.1	SEN00653.1	SAMN05216180_0075	SAMN05216180_2437	Type I restriction enzyme M protein.	Uncharacterized conserved protein.	0.624
SEM46147.1	SEM46097.1	SAMN05216180_0076	SAMN05216180_0074	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit.	0.981
SEM46147.1	SEM46128.1	SAMN05216180_0076	SAMN05216180_0075	Type I restriction enzyme, S subunit.	Type I restriction enzyme M protein.	0.996
SEM46147.1	SEM46177.1	SAMN05216180_0076	SAMN05216180_0077	Type I restriction enzyme, S subunit.	Zn-dependent peptidase ImmA, M78 family.	0.780
SEM46147.1	SEN00603.1	SAMN05216180_0076	SAMN05216180_2434	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.721
SEM46147.1	SEN00653.1	SAMN05216180_0076	SAMN05216180_2437	Type I restriction enzyme, S subunit.	Uncharacterized conserved protein.	0.683
SEM46147.1	SEN00676.1	SAMN05216180_0076	SAMN05216180_2438	Type I restriction enzyme, S subunit.	Type I restriction enzyme M protein.	0.960
SEM46177.1	SEM46097.1	SAMN05216180_0077	SAMN05216180_0074	Zn-dependent peptidase ImmA, M78 family.	Type I restriction enzyme, R subunit.	0.780
SEM46177.1	SEM46128.1	SAMN05216180_0077	SAMN05216180_0075	Zn-dependent peptidase ImmA, M78 family.	Type I restriction enzyme M protein.	0.780

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