(12 nodes) MbtH-like domain, and Condensation domain network (Streptomyces cyaneogriseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJP00630.1	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3069 aa)
	AJP00658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1307 aa)
	AJP00659.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
	AJP00811.1	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)
	AJP00812.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AJP01002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	AJP03823.1	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJP05037.1	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	AJP05136.1	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
	AJP05138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (1440 aa)
	AJP05167.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AJP05984.1	Adenylate-forming protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)

Your Current Organism:

Streptomyces cyaneogriseus

NCBI taxonomy Id: 477245
Other names: S. cyaneogriseus subsp. noncyanogenus, Streptomyces cyaneogriseus subsp. noncyanogenus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJP00630.1	AJP00658.1	TU94_02965	TU94_03195	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AJP00630.1	AJP00659.1	TU94_02965	TU94_03210	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJP00630.1	AJP00811.1	TU94_02965	TU94_04255	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJP00630.1	AJP00812.1	TU94_02965	TU94_04265	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AJP00630.1	AJP01002.1	TU94_02965	TU94_05490	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJP00630.1	AJP03823.1	TU94_02965	TU94_22425	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AJP00630.1	AJP05037.1	TU94_02965	TU94_29985	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJP00630.1	AJP05136.1	TU94_02965	TU94_30630	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJP00630.1	AJP05138.1	TU94_02965	TU94_30645	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.946
AJP00630.1	AJP05167.1	TU94_02965	TU94_30825	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJP00630.1	AJP05984.1	TU94_02965	TU94_31215	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate-forming protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AJP00658.1	AJP00630.1	TU94_03195	TU94_02965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AJP00658.1	AJP00659.1	TU94_03195	TU94_03210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJP00658.1	AJP00811.1	TU94_03195	TU94_04255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJP00658.1	AJP00812.1	TU94_03195	TU94_04265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
AJP00658.1	AJP01002.1	TU94_03195	TU94_05490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AJP00658.1	AJP03823.1	TU94_03195	TU94_22425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
AJP00658.1	AJP05037.1	TU94_03195	TU94_29985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJP00658.1	AJP05136.1	TU94_03195	TU94_30630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJP00658.1	AJP05138.1	TU94_03195	TU94_30645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.950