(45 nodes) MetI-like superfamily, and Bacterial extracellular solute-binding protein network (Streptomyces cyaneogriseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJP00606.1	Arabinogalactan endo-1 4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	AJP00608.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AJP05472.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJP00609.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	AJP00610.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AJP00625.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	AJP00771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	AJP00772.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AJP01300.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (444 aa)
	AJP01732.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AJP01733.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJP01734.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AJP02148.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AJP02149.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AJP02150.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AJP02236.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AJP05666.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AJP05667.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AJP03109.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (362 aa)
	AJP03727.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AJP05816.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AJP03728.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJP05839.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	AJP05840.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AJP03881.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AJP05841.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	AJP05882.1	Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1246 aa)
	AJP04324.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AJP04325.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AJP04326.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AJP04327.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	AJP04563.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJP04564.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJP04565.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	AJP04566.1	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (811 aa)
	AJP04567.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AJP05912.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AJP04598.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	AJP04599.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJP04600.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJP05913.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (789 aa)
	AJP05112.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AJP06007.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AJP05383.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AJP05384.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)

Your Current Organism:

Streptomyces cyaneogriseus

NCBI taxonomy Id: 477245
Other names: S. cyaneogriseus subsp. noncyanogenus, Streptomyces cyaneogriseus subsp. noncyanogenus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJP00606.1	AJP00608.1	TU94_02815	TU94_02825	Arabinogalactan endo-1 4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJP00606.1	AJP00610.1	TU94_02815	TU94_02840	Arabinogalactan endo-1 4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJP00606.1	AJP05472.1	TU94_02815	TU94_02830	Arabinogalactan endo-1 4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AJP00608.1	AJP00606.1	TU94_02825	TU94_02815	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinogalactan endo-1 4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJP00608.1	AJP00609.1	TU94_02825	TU94_02835	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJP00608.1	AJP00610.1	TU94_02825	TU94_02840	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
AJP00608.1	AJP00771.1	TU94_02825	TU94_03995	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJP00608.1	AJP00772.1	TU94_02825	TU94_04005	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJP00608.1	AJP01300.1	TU94_02825	TU94_07235	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.645
AJP00608.1	AJP01732.1	TU94_02825	TU94_09635	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AJP00608.1	AJP01733.1	TU94_02825	TU94_09640	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AJP00608.1	AJP02148.1	TU94_02825	TU94_12265	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AJP00608.1	AJP02149.1	TU94_02825	TU94_12270	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJP00608.1	AJP02236.1	TU94_02825	TU94_12830	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJP00608.1	AJP03109.1	TU94_02825	TU94_18145	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.645
AJP00608.1	AJP03728.1	TU94_02825	TU94_21825	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJP00608.1	AJP03881.1	TU94_02825	TU94_22820	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJP00608.1	AJP04325.1	TU94_02825	TU94_25535	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJP00608.1	AJP04599.1	TU94_02825	TU94_27230	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJP00608.1	AJP04600.1	TU94_02825	TU94_27235	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455