(17 nodes) Extracellular exosome network (Streptomyces cyaneogriseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tdh	L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. (342 aa)
	AJP04915.1	Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJP04927.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	AJP01197.1	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AJP01558.1	Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	glyQS	glycyl-tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (460 aa)
	AJP02133.1	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJP00643.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AJP02798.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AJP05834.1	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJP03847.1	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJP04587.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AJP04640.1	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
	AJP04680.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	AJP02314.1	acyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AJP01085.1	Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJP05147.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)

Your Current Organism:

Streptomyces cyaneogriseus

NCBI taxonomy Id: 477245
Other names: S. cyaneogriseus subsp. noncyanogenus, Streptomyces cyaneogriseus subsp. noncyanogenus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJP00643.1	AJP05147.1	TU94_03095	TU94_30700	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJP01558.1	AJP02133.1	TU94_08670	TU94_12170	Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJP02133.1	AJP01558.1	TU94_12170	TU94_08670	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJP04680.1	AJP04927.1	TU94_27700	TU94_29215	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AJP04927.1	AJP04680.1	TU94_29215	TU94_27700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AJP05147.1	AJP00643.1	TU94_30700	TU94_03095	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902