STRINGSTRING
SIS63839.1 SIS63839.1 SIS63861.1 SIS63861.1 SIS63881.1 SIS63881.1 SIS95715.1 SIS95715.1 SIS95729.1 SIS95729.1 SIS95743.1 SIS95743.1 SIT29774.1 SIT29774.1 SIT29777.1 SIT29777.1 SIT29779.1 SIT29779.1 SIT29782.1 SIT29782.1 SIT34225.1 SIT34225.1 SIT34226.1 SIT34226.1 SIT34227.1 SIT34227.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SIS63839.1X-Pro dipeptidyl-peptidase (S15 family). (1097 aa)
SIS63861.1SusD family protein. (479 aa)
SIS63881.1TonB-linked outer membrane protein, SusC/RagA family. (1214 aa)
SIS95715.1SusD family protein. (438 aa)
SIS95729.1TonB-linked outer membrane protein, SusC/RagA family. (1106 aa)
SIS95743.1Protein of unknown function. (862 aa)
SIT29774.1Protein of unknown function. (855 aa)
SIT29777.1ABC-2 type transport system ATP-binding protein. (131 aa)
SIT29779.1SusD family protein. (457 aa)
SIT29782.1TonB-linked outer membrane protein, SusC/RagA family. (1240 aa)
SIT34225.1Protein of unknown function. (814 aa)
SIT34226.1SusD family protein. (477 aa)
SIT34227.1TonB-linked outer membrane protein, SusC/RagA family. (1223 aa)
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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