(42 nodes) Domain of unknown function (DUF4974), and Sigma-70, region 4 network (Filimonas lacunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIS83730.1	RNA polymerase sigma-70 factor, ECF subfamily. (190 aa)
	SIS83746.1	FecR family protein. (402 aa)
	SIS83846.1	RNA polymerase sigma-70 factor, ECF subfamily. (230 aa)
	SIS83860.1	FecR family protein. (392 aa)
	SIS63898.1	FecR family protein. (338 aa)
	SIS63917.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
	SIS67292.1	FecR family protein. (309 aa)
	SIS98909.1	RNA polymerase sigma-70 factor, ECF subfamily. (181 aa)
	SIS98925.1	FecR family protein. (351 aa)
	SIT04389.1	FecR family protein. (328 aa)
	SIT05772.1	FecR family protein. (331 aa)
	SIT06588.1	FecR family protein. (371 aa)
	SIT06604.1	RNA polymerase sigma-70 factor, ECF subfamily. (197 aa)
	SIT08278.1	FecR family protein. (307 aa)
	SIT03578.1	FecR family protein. (376 aa)
	SIT03588.1	RNA polymerase sigma-70 factor, ECF subfamily. (183 aa)
	SIT03601.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
	SIT21490.1	FecR family protein. (392 aa)
	SIT21555.1	FecR family protein. (345 aa)
	SIT21640.1	FecR family protein. (411 aa)
	SIT22228.1	FecR family protein. (317 aa)
	SIT21032.1	FecR family protein. (378 aa)
	SIT25605.1	FecR family protein. (335 aa)
	SIT27808.1	FecR family protein. (354 aa)
	SIT28903.1	FecR family protein. (344 aa)
	SIT28905.1	RNA polymerase sigma-70 factor, ECF subfamily. (189 aa)
	SIT29021.1	FecR family protein. (337 aa)
	SIT29032.1	RNA polymerase sigma-70 factor, ECF subfamily. (186 aa)
	SIT29083.1	FecR family protein. (280 aa)
	SIT30004.1	RNA polymerase sigma-70 factor, ECF subfamily. (197 aa)
	SIT30008.1	FecR family protein. (383 aa)
	SIT30415.1	RNA polymerase sigma-70 factor, ECF subfamily. (188 aa)
	SIT31140.1	FecR family protein. (348 aa)
	SIT33628.1	FecR family protein. (410 aa)
	SIT33630.1	RNA polymerase sigma-70 factor, ECF subfamily. (223 aa)
	SIT33632.1	RNA polymerase sigma-70 factor, ECF subfamily. (195 aa)
	SIT33597.1	FecR family protein. (391 aa)
	SIT33733.1	FecR family protein. (380 aa)
	SIT34189.1	RNA polymerase sigma-70 factor, ECF subfamily. (191 aa)
	SIT34191.1	FecR family protein. (393 aa)
	SIT34417.1	RNA polymerase sigma-70 factor, ECF subfamily. (172 aa)
	SIT34419.1	FecR family protein. (335 aa)

Your Current Organism:

Filimonas lacunae

NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIS63898.1	SIS63917.1	SAMN05421788_101362	SAMN05421788_101363	FecR family protein.	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	0.727
SIS63898.1	SIS83730.1	SAMN05421788_101362	SAMN05421788_1011511	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.527
SIS63898.1	SIS83746.1	SAMN05421788_101362	SAMN05421788_1011512	FecR family protein.	FecR family protein.	0.774
SIS63898.1	SIS83846.1	SAMN05421788_101362	SAMN05421788_1011518	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.561
SIS63898.1	SIS83860.1	SAMN05421788_101362	SAMN05421788_1011519	FecR family protein.	FecR family protein.	0.773
SIS63898.1	SIS98909.1	SAMN05421788_101362	SAMN05421788_102519	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.562
SIS63898.1	SIT03578.1	SAMN05421788_101362	SAMN05421788_10340	FecR family protein.	FecR family protein.	0.753
SIS63898.1	SIT03601.1	SAMN05421788_101362	SAMN05421788_10342	FecR family protein.	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	0.417
SIS63898.1	SIT04389.1	SAMN05421788_101362	SAMN05421788_103103	FecR family protein.	FecR family protein.	0.773
SIS63898.1	SIT06588.1	SAMN05421788_101362	SAMN05421788_103265	FecR family protein.	FecR family protein.	0.773
SIS63898.1	SIT06604.1	SAMN05421788_101362	SAMN05421788_103266	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.779
SIS63898.1	SIT08278.1	SAMN05421788_101362	SAMN05421788_103371	FecR family protein.	FecR family protein.	0.726
SIS63898.1	SIT21032.1	SAMN05421788_101362	SAMN05421788_10592	FecR family protein.	FecR family protein.	0.775
SIS63898.1	SIT21490.1	SAMN05421788_101362	SAMN05421788_105154	FecR family protein.	FecR family protein.	0.766
SIS63898.1	SIT22228.1	SAMN05421788_101362	SAMN05421788_105261	FecR family protein.	FecR family protein.	0.775
SIS63898.1	SIT25605.1	SAMN05421788_101362	SAMN05421788_106342	FecR family protein.	FecR family protein.	0.774
SIS63898.1	SIT27808.1	SAMN05421788_101362	SAMN05421788_107323	FecR family protein.	FecR family protein.	0.725
SIS63898.1	SIT28903.1	SAMN05421788_101362	SAMN05421788_108165	FecR family protein.	FecR family protein.	0.775
SIS63898.1	SIT28905.1	SAMN05421788_101362	SAMN05421788_108166	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.607
SIS63898.1	SIT29032.1	SAMN05421788_101362	SAMN05421788_108200	FecR family protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.764

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