STRINGSTRING
rsmI rsmI rsmA rsmA Daud_0074 Daud_0074 Daud_0112 Daud_0112 Daud_0113 Daud_0113 thyX thyX Daud_0190 Daud_0190 Daud_0200 Daud_0200 Daud_0394 Daud_0394 Daud_0442 Daud_0442 Daud_0443 Daud_0443 prmA prmA Daud_0496 Daud_0496 Daud_0506 Daud_0506 Daud_0535 Daud_0535 Daud_0539 Daud_0539 Daud_0555 Daud_0555 trmFO trmFO Daud_0632 Daud_0632 trmD trmD Daud_0673 Daud_0673 Daud_0708 Daud_0708 Daud_0772 Daud_0772 Daud_0872 Daud_0872 Daud_0873 Daud_0873 Daud_0876 Daud_0876 Daud_1028 Daud_1028 Daud_1049 Daud_1049 menG menG Daud_1148 Daud_1148 Daud_1330 Daud_1330 Daud_1346 Daud_1346 Daud_1379 Daud_1379 rsmH rsmH Daud_1450 Daud_1450 Daud_1458 Daud_1458 Daud_1481 Daud_1481 Daud_1532 Daud_1532 rlmN rlmN Daud_1591 Daud_1591 Daud_1690 Daud_1690 Daud_1695 Daud_1695 Daud_1740 Daud_1740 Daud_1851 Daud_1851 Daud_1852 Daud_1852 Daud_1853 Daud_1853 Daud_1854 Daud_1854 Daud_1855 Daud_1855 cbiD cbiD Daud_1985 Daud_1985 metE metE Daud_2054 Daud_2054 prmA-2 prmA-2 prmC prmC Daud_2155 Daud_2155 Daud_2184 Daud_2184 rsmG rsmG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
rsmIUroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (282 aa)
rsmADimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (299 aa)
Daud_0074TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: mta:Moth_0084 MazG family protein. (487 aa)
Daud_0112PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; Fe-S cluster domain protein; KEGG: det:DET0699 corrinoid/iron-sulfur protein, large subunit. (452 aa)
Daud_0113PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase. (290 aa)
thyXThymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. (245 aa)
Daud_0190TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sth:STH3115 rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (251 aa)
Daud_0200PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcc:XCC1068 possible DNA methylase. (896 aa)
Daud_0394KEGG: gvi:gll2740 unknown protein. (1581 aa)
Daud_0442PFAM: putative RNA methylase; KEGG: tvo:TVN1413 adenine-specific DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family. (258 aa)
Daud_0443Methyltransferase type 12; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sit:TM1040_1749 methyltransferase type 12. (208 aa)
prmARibosomal L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (292 aa)
Daud_0496PFAM: protein of unknown function DUF633; KEGG: mta:Moth_0625 protein of unknown function DUF633. (231 aa)
Daud_0506PFAM: protein of unknown function DUF1156; KEGG: ter:Tery_4275 protein of unknown function DUF1156. (1003 aa)
Daud_0535TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sth:STH2818 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (465 aa)
Daud_0539Hypothetical protein; KEGG: mba:Mbar_A1016 type I restriction-modification system methyltransferase subunit. (148 aa)
Daud_0555KEGG: swo:Swol_0978 hypothetical protein. (267 aa)
trmFOGid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (439 aa)
Daud_0632TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: sth:STH1438 putative RNA methylase. (187 aa)
trmDtRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (249 aa)
Daud_0673Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ana:all0772 hypothetical protein. (253 aa)
Daud_0708PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpc:RPC_4152 DNA methylase N-4/N-6. (545 aa)
Daud_0772Hypothetical protein; KEGG: fra:Francci3_0192 N-6 DNA methylase. (44 aa)
Daud_0872PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; Fe-S cluster domain protein; KEGG: chy:CHY_1223 acetyl-CoA decarbonylase/synthase complex subunit gamma. (443 aa)
Daud_0873PFAM: ferredoxin; KEGG: chy:CHY_1224 iron-sulfur cluster binding protein. (630 aa)
Daud_0876PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase. (281 aa)
Daud_1028TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: tte:TTE1299 predicted rRNA methylase. (274 aa)
Daud_1049RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (153 aa)
menGUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (248 aa)
Daud_1148PFAM: MCP methyltransferase, CheR-type; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1443 UbiE/COQ5 methyltransferase. (215 aa)
Daud_1330PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb2761 SAM-dependent methyltransferase. (248 aa)
Daud_1346TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein. (511 aa)
Daud_1379PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: tte:TTE1690 rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (272 aa)
rsmHS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (324 aa)
Daud_1450KEGG: mta:Moth_0833 hypothetical protein. (361 aa)
Daud_1458Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1176 UbiE/COQ5 methyltransferase. (265 aa)
Daud_1481tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. (286 aa)
Daud_1532methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (175 aa)
rlmNRadical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (318 aa)
Daud_1591Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (452 aa)
Daud_1690Methyltransferase type 11; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: ftf:FTF1781c hypothetical protein. (235 aa)
Daud_1695PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btk:BT9727_1112 possible O-antigen biosynthesis protein; possible glycosyltransferase; possible methyltransferase. (211 aa)
Daud_1740Protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase, CheR-type; KEGG: mta:Moth_0801 MCP methyltransferase, CheR-type. (269 aa)
Daud_1851TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region. (220 aa)
Daud_1852PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pca:Pcar_0472 cobalamin biosynthesis protein CbiG. (279 aa)
Daud_1853KEGG: mta:Moth_1092 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family. (247 aa)
Daud_1854TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1091 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family. (243 aa)
Daud_1855TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pca:Pcar_0474 precorrin-6Y C5,15-methyltransferase. (216 aa)
cbiDCobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. (369 aa)
Daud_1985Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mbo:Mb3756 possible transferase. (261 aa)
metE5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (754 aa)
Daud_2054Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (249 aa)
prmA-2Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (286 aa)
prmCModification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (287 aa)
Daud_2155PFAM: protein of unknown function DUF1385; KEGG: swo:Swol_2398 hypothetical protein. (308 aa)
Daud_2184PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tac:Ta0318m adenine-specific DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family. (371 aa)
rsmGMethyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (240 aa)
Your Current Organism:
Desulforudis audaxviator
NCBI taxonomy Id: 477974
Other names: C. Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator MP104C, Candidatus Desulforudis audaxviator str. MP104C, Candidatus Desulforudis audaxviator strain MP104C
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