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| | Daud_1943 | PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tte:TTE0148 Deoxycytidylate deaminase. (149 aa) |
| | Daud_1952 | PFAM: FeoA family protein; KEGG: mta:Moth_1434 FeoA. (79 aa) |
| | Daud_1953 | PFAM: FeoA family protein; KEGG: det:DET0097 iron dependent repressor, putative. (80 aa) |
| | Daud_1981 | PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; KEGG: tte:TTE1276 Endonuclease IV. (287 aa) |
| | metE | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (754 aa) |
| | tsaD | Putative metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (338 aa) |
| | thiC | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. (432 aa) |
| | ybeY | Cytidine deaminase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (301 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (374 aa) |
| | Daud_2175 | KEGG: chy:CHY_0128 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II. (288 aa) |
| | Daud_2188 | PFAM: CutA1 divalent ion tolerance protein; KEGG: lic:LIC10591 periplasmic divalent cation tolerance. (107 aa) |
| | Daud_2203 | KEGG: mta:Moth_2418 hypothetical protein. (286 aa) |
| | Daud_2221 | KEGG: mta:Moth_1876 hypothetical protein. (361 aa) |
| | larC | Protein of unknown function DUF111; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. (408 aa) |
| | Daud_1080 | PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE1774 Ferredoxin 1. (62 aa) |
| | tadA | CMP/dCMP deaminase, zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (156 aa) |
| | ftsH | ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (620 aa) |
| | Daud_0098 | PFAM: Silent information regulator protein Sir2; KEGG: tte:TTE1740 NAD-dependent protein deacetylase, Sir2 family. (249 aa) |
| | Daud_0112 | PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; Fe-S cluster domain protein; KEGG: det:DET0699 corrinoid/iron-sulfur protein, large subunit. (452 aa) |
| | Daud_0113 | PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase. (290 aa) |
| | Daud_0152 | TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit. (580 aa) |
| | Daud_0157 | Hydrogenase, Fe-only; KEGG: dsy:DSY4712 putative hydrogenase large subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein. (523 aa) |
| | Daud_0166 | PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sth:STH353 putative biotin synthetase. (370 aa) |
| | Daud_0179 | PFAM: UvrB/UvrC protein; KEGG: mta:Moth_0160 UvrB/UvrC protein. (167 aa) |
| | cysS | KEGG: mta:Moth_2484 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family. (478 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1154 aa) |
| | rpsZ | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | map | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (249 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (946 aa) |
| | gpmI | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (509 aa) |
| | Daud_0337 | PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: mta:Moth_2295 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (470 aa) |
| | Daud_0348 | Inorganic diphosphatase; PFAM: CBS domain containing protein; DHHA2 domain protein; DRTGG domain protein; KEGG: tma:TM0587 inorganic pyrophosphatase. (548 aa) |
| | Daud_0453 | PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein. (319 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (599 aa) |
| | htpX | HtpX domain protein; PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: bha:BH2702 heat-shock protein; Belongs to the peptidase M48B family. (294 aa) |
| | Daud_0543 | PFAM: Rubrerythrin; KEGG: mta:Moth_1286 rubrerythrin. (178 aa) |
| | Daud_0588 | PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; KEGG: dsy:DSY4019 hypothetical protein. (469 aa) |
| | ispG | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (349 aa) |
| | Daud_0623 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (372 aa) |
| | ribBA | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. (402 aa) |
| | rnhB | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (267 aa) |
| | Daud_0808 | PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pab:PAB1035 hypothetical protein. (519 aa) |
| | Daud_0827 | KEGG: tte:TTE2318 hypothetical protein. (85 aa) |
| | Daud_0857 | KEGG: mta:Moth_1876 hypothetical protein. (354 aa) |
| | thi4 | Thiazole biosynthesis enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur. (259 aa) |
| | Daud_0870 | KEGG: mma:MM0121 carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane. (628 aa) |
| | Daud_0872 | PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; Fe-S cluster domain protein; KEGG: chy:CHY_1223 acetyl-CoA decarbonylase/synthase complex subunit gamma. (443 aa) |
| | Daud_0876 | PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase. (281 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (880 aa) |
| | rnj | Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (554 aa) |
| | Daud_0984 | Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein. (81 aa) |
| | Daud_1042 | PFAM: nickel-dependent hydrogenase, large subunit; KEGG: chy:CHY_1545 [Ni/Fe] hydrogenase, large subunit. (485 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (275 aa) |
| | Daud_1060 | PFAM: nitrogen-fixing NifU domain protein; KEGG: bcl:ABC2939 nitrogen fixation protein. (43 aa) |
| | mqnE | Radical SAM domain protein; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. (368 aa) |
| | mqnC | Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). (356 aa) |
| | Daud_1102 | PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: det:DET0867 hydrogenase, group 4, EchE subunit, putative. (358 aa) |
| | Daud_1104 | PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: mta:Moth_1467 formylmethanofuran dehydrogenase, subunit E region. (197 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (214 aa) |
| | folE | PFAM: GTP cyclohydrolase I; KEGG: chy:CHY_0955 GTP cyclohydrolase I. (186 aa) |
| | queC | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). (220 aa) |
| | Daud_1267 | PFAM: FeoA family protein; KEGG: mbu:Mbur_0777 FeoA. (83 aa) |
| | deoB | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (397 aa) |
| | pyrC | Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. (429 aa) |
| | Daud_1323 | TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: tma:TM0896 galactose-1-phosphate uridylyltransferase. (351 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (328 aa) |
| | Daud_1337 | TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit. (590 aa) |
| | Daud_1351 | Transcriptional regulator, TraR/DksA family; PFAM: zinc finger, DksA/TraR C4-type; KEGG: mta:Moth_0866 transcriptional regulators, TraR/DksA family. (212 aa) |
| | mutM | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (276 aa) |
| | ileS | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (930 aa) |
| | Daud_1450 | KEGG: mta:Moth_0833 hypothetical protein. (361 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (417 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (501 aa) |
| | Daud_1548 | TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit. (615 aa) |
| | Daud_1549 | PFAM: iron dependent repressor; KEGG: tko:TK0107 manganese-dependent transcription regulator. (160 aa) |
| | Daud_1551 | PFAM: FeoA family protein; KEGG: mta:Moth_1183 FeoA. (74 aa) |
| | Daud_1577 | Putative formate dehydrogenase formation protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (282 aa) |
| | Daud_1580 | Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH2601 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (808 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (735 aa) |
| | Daud_1605 | TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: bha:BH1469 hypothetical protein. (368 aa) |
| | hisD | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (439 aa) |
| | Daud_1644 | TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: mta:Moth_2178 hydrogenase assembly chaperone HypC/HupF. (80 aa) |
| | Daud_1645 | TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: mta:Moth_2179 (NiFe) hydrogenase maturation protein HypF. (773 aa) |
| | Daud_1648 | TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: mta:Moth_2180 hydrogenase accessory protein HypB. (223 aa) |
| | hypA | Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (136 aa) |
| | Daud_1651 | PFAM: nickel-dependent hydrogenase, large subunit; KEGG: ade:Adeh_4162 nickel-dependent hydrogenase, large subunit. (485 aa) |
| | Daud_1669 | PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: bca:BCE_3666 N-acetylmuramoyl-L-alanine amidase, putative. (173 aa) |
| | Daud_1719 | PFAM: PHP C-terminal domain protein; KEGG: btk:BT9727_4957 phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis). (261 aa) |
| | Daud_1832 | Putative transcriptional regulator, CopG family. (96 aa) |
| | Daud_1879 | Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter. (836 aa) |
| | Daud_1892 | PFAM: MOSC domain containing protein; KEGG: mta:Moth_2133 MOSC. (147 aa) |
| | Daud_1902 | Peptidase M15D, vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (404 aa) |
| | Daud_1940 | Hydrogen:quinone oxidoreductase; PFAM: nickel-dependent hydrogenase, large subunit; KEGG: chy:CHY_1545 [Ni/Fe] hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (475 aa) |
