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| | ftsY | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (304 aa) |
| | ffh | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (452 aa) |
| | Daud_0663 | GTP-binding protein, HSR1-related; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (284 aa) |
| | Daud_0671 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG. (252 aa) |
| | Daud_0672 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK3022 branched chain amino acid ABC transporter (ATP-binding protein). (239 aa) |
| | Daud_0689 | Putative circadian clock protein, KaiC; PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0885 hypothetical protein. (467 aa) |
| | Daud_0800 | KEGG: fnu:FN0446 hypothetical protein. (937 aa) |
| | Daud_0809 | Hypothetical protein. (110 aa) |
| | Daud_0815 | PFAM: TRAG family protein; KEGG: tte:TTE2042 ATPase involved in conjugal plasmid transfer. (648 aa) |
| | Daud_0816 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mth:MTH492 ATP-dependent RNA helicase, eIF-4A family. (685 aa) |
| | recD2 | Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (688 aa) |
| | Daud_0820 | Mg chelatase, subunit ChlI; KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase. (514 aa) |
| | Daud_0837 | PFAM: cell divisionFtsK/SpoIIIE; KEGG: mta:Moth_1072 cell division FtsK/SpoIIIE. (727 aa) |
| | Daud_0841 | Vesicle-fusing ATPase; KEGG: tte:TTE0122 ATP-dependent Zn proteases; PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family. (491 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (345 aa) |
| | Daud_0874 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1225 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC. (258 aa) |
| | Daud_0893 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mta:Moth_1184 IstB-like ATP-binding protein. (241 aa) |
| | Daud_0896 | PFAM: DRTGG domain protein; KEGG: dvu:DVU1438 cobyrinic acid a,c-diamide synthase family protein. (351 aa) |
| | Daud_0897 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. (492 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (888 aa) |
| | Daud_0951 | KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (372 aa) |
| | Daud_0956 | PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: mta:Moth_1554 type II secretion system protein E. (561 aa) |
| | Daud_0968 | PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: mta:Moth_1554 type II secretion system protein E. (561 aa) |
| | Daud_0969 | Twitching motility protein; KEGG: chy:CHY_0631 type IV pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (365 aa) |
| | mobA | Molybdopterin-guanine dinucleotide biosynthesis protein B; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor. (374 aa) |
| | aroK | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (189 aa) |
| | Daud_0991 | PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0630 type IV pilus assembly protein PilB. (564 aa) |
| | Daud_1007 | SMART: AAA ATPase; KEGG: sth:STH1862 stage III sporulation protein AA. (332 aa) |
| | Daud_1031 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (572 aa) |
| | Daud_1094 | KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein. (635 aa) |
| | hflX | GTP-binding protein, HSR1-related; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (422 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (214 aa) |
| | Daud_1126 | KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (326 aa) |
| | Daud_1127 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein. (235 aa) |
| | Daud_1128 | PFAM: ABC transporter related; KEGG: gsu:GSU3392 branched-chain amino acid ABC transporter, ATP-binding protein. (256 aa) |
| | Daud_1137 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1128 ABC transporter related. (240 aa) |
| | Daud_1145 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1715 ATPase. (236 aa) |
| | Daud_1150 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU0103 cation ABC transporter, ATP-binding protein, putative. (272 aa) |
| | der | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (438 aa) |
| | Daud_1550 | Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (663 aa) |
| | Daud_1546 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC1702 metal ion ABC transporter ATP-binding protein. (248 aa) |
| | Daud_1543 | PFAM: peptidase S16, lon domain protein; KEGG: rxy:Rxyl_1929 ATP-dependent protease, putative. (865 aa) |
| | pstB-2 | ABC transporter related; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (244 aa) |
| | Daud_1537 | Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: pca:Pcar_0748 hypothetical protein. (287 aa) |
| | Daud_1495 | KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. (304 aa) |
| | Daud_2211 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (442 aa) |
| | Daud_2218 | TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; KEGG: chy:CHY_0031 GTP-binding protein YchF. (327 aa) |
| | Daud_2230 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bsu:BG10055 soj protein. (254 aa) |
| | mnmE | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (461 aa) |
| | Daud_1662 | KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein. (240 aa) |
| | Daud_1672 | Superfamily I DNA and RNA helicases and helicase subunits-like protein; KEGG: fal:FRAAL2455 hypothetical protein. (946 aa) |
| | Daud_1673 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: tfu:Tfu_1124 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal. (1589 aa) |
| | Daud_1675 | KEGG: pst:PSPTO_0047 UvrD/REP helicase family protein. (212 aa) |
| | Daud_1746 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1011 putative flagellar biosynthesis protein. (290 aa) |
| | Daud_1747 | PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: mta:Moth_0791 GTP-binding signal recognition particle SRP54, G-domain. (413 aa) |
| | purA | Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (430 aa) |
| | Daud_1762 | Flagellar protein export ATPase FliI; KEGG: mta:Moth_0774 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase. (454 aa) |
| | Daud_1813 | Metal dependent phosphohydrolase; KEGG: tte:TTE2660 predicted helicases; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; metal-dependent phosphohydrolase, HD sub domain; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. (729 aa) |
| | cobQ | Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (496 aa) |
| | cbiA | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (454 aa) |
| | Daud_1858 | Cobalt ABC transporter, ATPase subunit; KEGG: mta:Moth_1219 cobalt transport protein ATP-binding subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; Precorrin-8X methylmutase CbiC/CobH; SMART: AAA ATPase. (541 aa) |
| | obg | Small GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (425 aa) |
| | Daud_1951 | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (680 aa) |
| | Daud_2016 | PFAM: protein of unknown function UPF0079; KEGG: mta:Moth_2160 protein of unknown function UPF0079. (158 aa) |
| | Daud_2041 | PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family. (435 aa) |
| | era | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (308 aa) |
| | Daud_2048 | PFAM: PhoH family protein; KH, type 1, domain protein; KEGG: chy:CHY_0425 PhoH-like protein. (323 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (602 aa) |
| | Daud_2068 | TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: mta:Moth_0576 DNA polymerase III, delta subunit. (335 aa) |
| | Daud_2076 | KEGG: chy:CHY_0042 hypothetical protein. (237 aa) |
| | secA | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (903 aa) |
| | atpD | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (472 aa) |
| | atpA | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (507 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (492 aa) |
| | pyrG | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (540 aa) |
| | cbiA-2 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (465 aa) |
| | Daud_1648 | TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: mta:Moth_2180 hydrogenase accessory protein HypB. (223 aa) |
| | Daud_1619 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: mta:Moth_2014 ATP-dependent DNA helicase PcrA. (718 aa) |
| | Daud_1492 | KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family. (753 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (417 aa) |
| | Daud_1477 | Peptidase S16, lon domain protein; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; peptidase S16, lon domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dsy:DSY3196 hypothetical protein. (563 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (797 aa) |
| | Daud_1461 | TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3174 hypothetical protein. (266 aa) |
| | pstB | Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (251 aa) |
| | coaE | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (197 aa) |
| | Daud_1397 | PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sth:STH1647 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (533 aa) |
| | recD2-2 | Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (719 aa) |
| | Daud_1389 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH824 branched chain amino acid ABC transporter ATP-binding protein. (256 aa) |
| | Daud_1388 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related. (236 aa) |
| | mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (784 aa) |
| | Daud_1371 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: det:DET0815 FeS assembly ATPase SufC, putative. (251 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (344 aa) |
| | bioD | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (263 aa) |
| | Daud_1318 | Hypothetical protein. (214 aa) |
| | Daud_1315 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1933 iron ABC transporter ATP-binding protein. (267 aa) |
| | Daud_1312 | PFAM: cobalbumin biosynthesis enzyme; KEGG: deh:cbdb_A644 cobinamide kinase. (200 aa) |
| | Daud_1290 | CRISPR-associated helicase Cas3; KEGG: mba:Mbar_A0309 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. (795 aa) |
| | Daud_1278 | Metallophosphoesterase; PFAM: SMC domain protein; metallophosphoesterase; KEGG: chy:CHY_0945 Ser/Thr protein phosphatase family protein. (695 aa) |
| | addB | UvrD-like DNA helicase, C terminal; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation; this subunit has 5' -> 3' nuclease activity. (1165 aa) |
| | addA | UvrD-like DNA helicase, C terminal; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily. (1230 aa) |
| | Daud_1266 | GTP-binding protein, HSR1-related; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (689 aa) |
| | Daud_1259 | SMART: AAA ATPase; KEGG: pai:PAE0090 hypothetical protein. (412 aa) |
| | Daud_1229 | TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; Miro domain protein; KEGG: chy:CHY_0961 translation elongation factor G. (673 aa) |
| | Daud_1214 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A2397 iron(III) ABC transporter, ATP-binding protein. (274 aa) |
| | Daud_1213 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_2030 ABC transporter, ATP-binding protein. (309 aa) |
| | Daud_1209 | KEGG: mba:Mbar_A1776 magnesium-chelatase subunit; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase. (670 aa) |
| | Daud_1208 | KEGG: mba:Mbar_A1776 magnesium-chelatase subunit; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase. (372 aa) |
| | Daud_1207 | KEGG: cyb:CYB_2030 ABC transporter, ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (279 aa) |
| | cmk | KEGG: mta:Moth_1331 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. (232 aa) |
| | Daud_1610 | KEGG: tte:TTE2200 hypothetical protein. (231 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (197 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (735 aa) |
| | rsgA | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (293 aa) |
| | Daud_1559 | TGS domain protein; PFAM: GTP-binding protein, HSR1-related; TGS domain protein; KEGG: ade:Adeh_2114 GTP-binding protein, HSR1-related. (311 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (445 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (360 aa) |
| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (447 aa) |
| | tmk | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (221 aa) |
| | Daud_0037 | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gme:Gmet_2319 DNA polymerase III delta prime subunit. (338 aa) |
| | Daud_0043 | TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: chy:CHY_2619 cob(I)alamin adenosyltransferase. (176 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1176 aa) |
| | ftsH | ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (620 aa) |
| | fhs | PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: rxy:Rxyl_2519 formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (566 aa) |
| | Daud_0091 | Conserved hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (304 aa) |
| | Daud_0107 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tte:TTE1709 CO dehydrogenase maturation factor. (251 aa) |
| | fhs-2 | PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: chy:CHY_2385 formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (557 aa) |
| | Daud_0139 | ATPase; KEGG: mta:Moth_1296 ATPase. (384 aa) |
| | nifH | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. (280 aa) |
| | Daud_0165 | TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: mta:Moth_1277 small GTP-binding protein domain. (427 aa) |
| | Daud_0181 | PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2348 negative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family. (812 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (445 aa) |
| | Daud_0199 | PFAM: type III restriction enzyme, res subunit; KEGG: bpe:BP3117 putative restriction endonuclease. (1021 aa) |
| | tuf | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (399 aa) |
| | fusA | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (689 aa) |
| | tuf-2 | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (400 aa) |
| | Daud_0259 | PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bcl:ABC2496 DNA/RNA helicase, SNF2 family. (578 aa) |
| | Daud_0275 | Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (270 aa) |
| | ftsE | Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (228 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (674 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (946 aa) |
| | Daud_0300 | Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. (294 aa) |
| | Daud_0312 | Arsenite-activated ATPase ArsA; KEGG: bcz:BCZK0288 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase. (397 aa) |
| | Daud_0382 | KEGG: gka:GK0319 hypothetical protein. (1404 aa) |
| | Daud_0388 | Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (324 aa) |
| | Daud_0389 | Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (321 aa) |
| | Daud_0392 | KEGG: swo:Swol_2010 hypothetical protein. (185 aa) |
| | Daud_0412 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3396 hypothetical protein. (219 aa) |
| | clpB | ATPase AAA-2 domain protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (862 aa) |
| | Daud_0503 | PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: swo:Swol_2010 hypothetical protein. (1147 aa) |
| | Daud_0505 | KEGG: eli:ELI_07890 predicted ATP-dependent endonuclease, OLD family protein. (663 aa) |
| | Daud_0533 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein. (226 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (882 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (310 aa) |
| | dinG | DNA polymerase III, epsilon subunit; 3'-5' exonuclease. (921 aa) |
| | Daud_0591 | PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: chy:CHY_1200 PrkA protein. (631 aa) |
| | hslU | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (464 aa) |
