47 items (Plasmopara halstedii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0P1AWQ5	Uncharacterized protein. (722 aa)
	A0A0P1AVU3	Uncharacterized conserved protein. (208 aa)
	A0A0P1ARE1	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (451 aa)
	A0A0N7L4G5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (231 aa)
	A0A0N7L4X1	Uncharacterized conserved protein. (713 aa)
	A0A0N7L5R8	Ribosomal protein l7. (244 aa)
	A0A0N7L607	Ribosome biogenesis brx1-like protein. (305 aa)
	A0A0N7L6N5	Nuc156 family protein. (634 aa)
	A0A0N7L6R3	Ribosomal protein l29. (123 aa)
	A0A0N7L812	60s ribosomal protein l5. (301 aa)
	A0A0N7L891	Ribosomal protein l10. (208 aa)
	A0A0P1A4C4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (664 aa)
	A0A0P1A4N7	Wee protein kinase. (508 aa)
	A0A0P1ANC1	Uncharacterized protein. (87 aa)
	A0A0P1ANB2	Uncharacterized protein. (98 aa)
	A0A0P1AN32	Low quality protein: ribosomal l1 domain-containing protein 1-like. (347 aa)
	A0A0P1AM71	Tetraspanin/Peripherin. (338 aa)
	A0A0P1ALQ8	Fha domain-interacting nucleolar. (233 aa)
	A0A0P1AKY9	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (318 aa)
	A0A0P1AKP1	Nucleolar pre-ribosomal-associated protein 1, N-terminal. (1224 aa)
	A0A0P1AIH2	60s ribosomal protein l23a; Belongs to the universal ribosomal protein uL23 family. (150 aa)
	A0A0P1AI83	P21-activated protein kinase-interacting. (433 aa)
	A0A0P1AGU8	Uncharacterized conserved protein. (429 aa)
	A0A0P1AEW0	Nucleolar protein-like/EBNA1-binding protein. (332 aa)
	A0A0P1ADM9	Ribosome production factor 1. (326 aa)
	A0A0P1ABZ1	Uncharacterized conserved protein. (231 aa)
	A0A0P1ABP4	Predicted MYND Zn-finger protein/hormone receptor interactor. (134 aa)
	A0A0P1AB13	Uncharacterized conserved protein. (590 aa)
	A0A0P1A612	Protein required for biogenesis of the ribosomal 60S subunit. (342 aa)
	A0A0P1A7J6	Protein MAK16 homolog; Belongs to the MAK16 family. (307 aa)
	A0A0P1AAJ0	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (844 aa)
	A0A0P1B7K1	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A0P1B692	Ribosomal l24 domain containing 1. (739 aa)
	A0A0P1B5I3	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (223 aa)
	A0A0P1B379	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
	A0A0P1B2B1	Ribosome biogenesis protein nsa2. (260 aa)
	A0A0P1B282	Beta-adaptin appendage, C-terminal subdomain. (412 aa)
	A0A0P1B1G2	60s ribosomal protein. (165 aa)
	A0A0P1B1E3	60s ribosomal protein. (214 aa)
	A0A0P1B0H6	Predicted Zn-finger protein. (417 aa)
	A0A0P1B0G7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	A0A0P1B0G0	Transmembrane protein. (370 aa)
	A0A0P1B0F5	Uncharacterized conserved protein. (272 aa)
	A0A0P1B0C0	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (662 aa)
	A0A0P1B0A6	Nucleolar gtp-binding protein 1-like isoform x1. (401 aa)
	A0A0P1AYI5	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (698 aa)
	A0A0P1AYH8	Uncharacterized conserved protein. (314 aa)

Your Current Organism:

Plasmopara halstedii

NCBI taxonomy Id: 4781
Other names: P. halstedii, Peronospora halstedii

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7L4G5	A0A0N7L5R8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosomal protein l7.	0.995
A0A0N7L4G5	A0A0N7L607	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome biogenesis brx1-like protein.	0.987
A0A0N7L4G5	A0A0N7L6N5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nuc156 family protein.	0.601
A0A0N7L4G5	A0A0N7L6R3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosomal protein l29.	0.994
A0A0N7L4G5	A0A0N7L812	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	60s ribosomal protein l5.	0.994
A0A0N7L4G5	A0A0N7L891	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosomal protein l10.	0.942
A0A0N7L4G5	A0A0P1A4C4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.981
A0A0N7L4G5	A0A0P1A4N7	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Wee protein kinase.	0.995
A0A0N7L4G5	A0A0P1A612	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Protein required for biogenesis of the ribosomal 60S subunit.	0.992
A0A0N7L4G5	A0A0P1A7J6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.976
A0A0N7L4G5	A0A0P1AAJ0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.992
A0A0N7L4G5	A0A0P1AB13	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized conserved protein.	0.428
A0A0N7L4G5	A0A0P1ABZ1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized conserved protein.	0.850
A0A0N7L4G5	A0A0P1ADM9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome production factor 1.	0.980
A0A0N7L4G5	A0A0P1AEW0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nucleolar protein-like/EBNA1-binding protein.	0.989
A0A0N7L4G5	A0A0P1AGU8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized conserved protein.	0.823
A0A0N7L4G5	A0A0P1AI83	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	P21-activated protein kinase-interacting.	0.814
A0A0N7L4G5	A0A0P1AIH2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	60s ribosomal protein l23a; Belongs to the universal ribosomal protein uL23 family.	0.995
A0A0N7L4G5	A0A0P1AKP1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nucleolar pre-ribosomal-associated protein 1, N-terminal.	0.428
A0A0N7L4G5	A0A0P1AKY9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.973