38 items (Plasmopara halstedii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0P1A7V4	Af404749_1syntaxin 6. (252 aa)
	A0A0P1A685	Osmotic stress-sensitive mutant 1. (129 aa)
	A0A0P1A5X7	Bet1 homolog. (126 aa)
	A0A0N7L8J0	Uncharacterized protein. (723 aa)
	A0A0N7L822	Agc rsk rskp90 protein kinase. (345 aa)
	A0A0N7L7U0	Predicted membrane protein. (267 aa)
	MED6	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (160 aa)
	A0A0P1A8X2	Sulfate permease family. (232 aa)
	A0A0N7L581	Target SNARE coiled-coil domain. (318 aa)
	A0A0N7L6N7	Uncharacterized protein. (431 aa)
	A0A0N7L6Q5	Vesicle-associated membrane; Belongs to the synaptobrevin family. (226 aa)
	A0A0N7L733	t-SNARE coiled-coil homology domain-containing protein. (352 aa)
	A0A0P1B595	Syntaxin 7-like protein. (271 aa)
	A0A0P1B519	Vesicle-associated membrane; Belongs to the synaptobrevin family. (260 aa)
	A0A0P1B4M3	Anti-silencing partial. (580 aa)
	A0A0P1B1N4	Synaptobrevin-like protein; Belongs to the synaptobrevin family. (199 aa)
	A0A0P1B0C0	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (662 aa)
	A0A0P1AZE1	Vesicle transport through interaction with t-snares 1a. (219 aa)
	A0A0P1AYR1	Uncharacterized protein. (111 aa)
	A0A0P1AYM0	Syntaxin-like protein; Belongs to the syntaxin family. (318 aa)
	A0A0P1AV79	Centromere subunit L. (333 aa)
	A0A0P1AUD1	SNARE protein TLG1/Syntaxin 6. (219 aa)
	A0A0P1APJ5	Premrnasplicing factor syf1. (235 aa)
	A0A0P1APA4	Protein syx-7. (223 aa)
	A0A0P1AMR9	Golgi SNAP receptor complex member. (224 aa)
	A0A0P1AMA1	Vesicle-associated membrane; Belongs to the synaptobrevin family. (226 aa)
	A0A0P1AJI3	Premrnasplicing factor syf1. (208 aa)
	A0A0P1AJ19	Sec20. (224 aa)
	A0A0P1AHM9	Uncharacterized protein. (640 aa)
	A0A0P1AHI4	Uncharacterized protein. (137 aa)
	A0A0P1AH86	Target SNARE coiled-coil domain. (115 aa)
	A0A0P1ADE0	Uncharacterized protein. (113 aa)
	A0A0P1ACV1	Vesicle-associated membrane protein 7b; Belongs to the synaptobrevin family. (257 aa)
	A0A0P1AC00	T-snare family protein; Belongs to the syntaxin family. (284 aa)
	A0A0P1AB77	Syntaxin-like protein; Belongs to the syntaxin family. (1404 aa)
	A0A0P1A9Y7	Mitochondrial transcription termination factor, mTERF. (351 aa)
	A0A0P1A9G2	Syntaxin-like protein. (268 aa)
	A0A0P1A9F5	SNARE protein Syntaxin 18/UFE1. (355 aa)

Your Current Organism:

Plasmopara halstedii

NCBI taxonomy Id: 4781
Other names: P. halstedii, Peronospora halstedii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7L6N7	A0A0N7L6Q5	Uncharacterized protein.	Vesicle-associated membrane; Belongs to the synaptobrevin family.	0.675
A0A0N7L6N7	A0A0N7L733	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.655
A0A0N7L6N7	A0A0N7L7U0	Uncharacterized protein.	Predicted membrane protein.	0.558
A0A0N7L6N7	A0A0N7L822	Uncharacterized protein.	Agc rsk rskp90 protein kinase.	0.826
A0A0N7L6N7	A0A0P1A5X7	Uncharacterized protein.	Bet1 homolog.	0.834
A0A0N7L6N7	A0A0P1A685	Uncharacterized protein.	Osmotic stress-sensitive mutant 1.	0.727
A0A0N7L6N7	A0A0P1A7V4	Uncharacterized protein.	Af404749_1syntaxin 6.	0.727
A0A0N7L6N7	A0A0P1A9F5	Uncharacterized protein.	SNARE protein Syntaxin 18/UFE1.	0.571
A0A0N7L6N7	A0A0P1A9G2	Uncharacterized protein.	Syntaxin-like protein.	0.655
A0A0N7L6N7	A0A0P1AC00	Uncharacterized protein.	T-snare family protein; Belongs to the syntaxin family.	0.766
A0A0N7L6N7	A0A0P1ACV1	Uncharacterized protein.	Vesicle-associated membrane protein 7b; Belongs to the synaptobrevin family.	0.675
A0A0N7L6N7	A0A0P1AH86	Uncharacterized protein.	Target SNARE coiled-coil domain.	0.727
A0A0N7L6N7	A0A0P1AJI3	Uncharacterized protein.	Premrnasplicing factor syf1.	0.746
A0A0N7L6N7	A0A0P1AMA1	Uncharacterized protein.	Vesicle-associated membrane; Belongs to the synaptobrevin family.	0.675
A0A0N7L6N7	A0A0P1AMR9	Uncharacterized protein.	Golgi SNAP receptor complex member.	0.786
A0A0N7L6N7	A0A0P1APJ5	Uncharacterized protein.	Premrnasplicing factor syf1.	0.746
A0A0N7L6N7	A0A0P1AUD1	Uncharacterized protein.	SNARE protein TLG1/Syntaxin 6.	0.727
A0A0N7L6N7	A0A0P1AV79	Uncharacterized protein.	Centromere subunit L.	0.727
A0A0N7L6N7	A0A0P1AZE1	Uncharacterized protein.	Vesicle transport through interaction with t-snares 1a.	0.746
A0A0N7L6N7	A0A0P1B1N4	Uncharacterized protein.	Synaptobrevin-like protein; Belongs to the synaptobrevin family.	0.857