(26 nodes) Phosphopantetheine attachment site network (Micromonospora carbonacea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIR61545.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1240 aa)
	KIR62223.1	Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1835 aa)
	KIR61549.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1040 aa)
	KIR61550.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1856 aa)
	KIR61733.1	Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	KIR61738.1	Phosphopantetheine-binding-protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)
	KIR61819.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1798 aa)
	KIR65023.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2452 aa)
	KIR65326.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1189 aa)
	KIR65945.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
	KIR66318.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	KIR66363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
	KIR66385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	KIR66426.1	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1207 aa)
	KIR66427.1	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1233 aa)
	KIR66428.1	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1223 aa)
	KIR66565.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1322 aa)
	acpP	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (79 aa)
	KIR61150.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	KIR61374.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1075 aa)
	KIR61375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa)
	KIR62012.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
	KIR62011.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1037 aa)
	KIR62277.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	KIR64201.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	KIR64204.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)

Your Current Organism:

Micromonospora carbonacea

NCBI taxonomy Id: 47853
Other names: ATCC 27114, ATCC 27115, DSM 43168, DSM 43815, IFO 14107, IFO 14108, JCM 3139, M. carbonacea, Micromonospora carbonacea subsp. aurantiaca, Micromonospora carbonacea subsp. carbonacea, NBRC 14108, NRRL 2972

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIR61150.1	KIR65326.1	TK50_25705	TK50_07715	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KIR61150.1	KIR66426.1	TK50_25705	TK50_15195	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KIR61150.1	KIR66427.1	TK50_25705	TK50_15200	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KIR61150.1	KIR66428.1	TK50_25705	TK50_15205	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KIR61374.1	KIR61375.1	TK50_27335	TK50_27345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.834
KIR61374.1	KIR61545.1	TK50_27335	TK50_28610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KIR61374.1	KIR61549.1	TK50_27335	TK50_28645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KIR61374.1	KIR61550.1	TK50_27335	TK50_28650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KIR61374.1	KIR61738.1	TK50_27335	TK50_29875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding-protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KIR61374.1	KIR62011.1	TK50_27335	TK50_31875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
KIR61374.1	KIR62012.1	TK50_27335	TK50_31880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KIR61374.1	KIR62223.1	TK50_27335	TK50_28630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
KIR61374.1	KIR65023.1	TK50_27335	TK50_05715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KIR61374.1	KIR65326.1	TK50_27335	TK50_07715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KIR61374.1	KIR65945.1	TK50_27335	TK50_11760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KIR61374.1	KIR66318.1	TK50_27335	TK50_14345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KIR61374.1	KIR66385.1	TK50_27335	TK50_14880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KIR61374.1	KIR66426.1	TK50_27335	TK50_15195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KIR61374.1	KIR66427.1	TK50_27335	TK50_15200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KIR61374.1	KIR66428.1	TK50_27335	TK50_15205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997

page 1 of 20

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About