(4 nodes) Polysaccharide transport network (Lewinella agarilytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEQ51193.1	Polysaccharide export outer membrane protein. (260 aa)
	SEQ18212.1	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold. (871 aa)
	SER23671.1	Polysaccharide export outer membrane protein. (250 aa)
	SER45250.1	Uncharacterized protein involved in exopolysaccharide biosynthesis. (374 aa)

Your Current Organism:

Lewinella agarilytica

NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ18212.1	SER45250.1	SAMN05444359_106171	SAMN05444359_1456	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.	Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.663
SEQ51193.1	SER45250.1	SAMN05444359_11120	SAMN05444359_1456	Polysaccharide export outer membrane protein.	Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.663
SER23671.1	SER45250.1	SAMN05444359_12944	SAMN05444359_1456	Polysaccharide export outer membrane protein.	Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.663
SER45250.1	SEQ18212.1	SAMN05444359_1456	SAMN05444359_106171	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.	0.663
SER45250.1	SEQ51193.1	SAMN05444359_1456	SAMN05444359_11120	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Polysaccharide export outer membrane protein.	0.663
SER45250.1	SER23671.1	SAMN05444359_1456	SAMN05444359_12944	Uncharacterized protein involved in exopolysaccharide biosynthesis.	Polysaccharide export outer membrane protein.	0.663